Gene annotation
Transcriptome id Sobic.005G176100.1
Synonym PMI2, Sb05g023560, DIN9
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
mannose-6-phosphate isomerase, putative, expressed
UniProt A0A1B6PT89
Pfam PF01238
Panther DB PTHR10309 PTHR10309:SF3
NCBI CDD KOG2757; Mannose-6-phosphate isomerase
KEGG Orthology K01809; manA, mannose-6-phosphate isomerase
Gene Ontology GO:0008270; zinc ion binding GO:0005975carbohydrate metabolic process GO:0004476mannose-6-phosphate isomerase activity GO:0009298GDP-mannose biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G67070 : Mannose-6-phosphate isomerase, type I
RAP-DB (Rice) LOC_Os01g03710.1 : mannose-6-phosphate isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a023642 , Zm00025a029441
Brachypodium KQJ87920
Barley HORVU3Hr1G003940.1 , HORVU3Hr1G003940.2 , HORVU4Hr1G029660.9 , HORVU4Hr1G029660.8 , HORVU4Hr1G029660.7 , HORVU4Hr1G029660.6 , HORVU4Hr1G029660.5 , HORVU4Hr1G029660.4 , HORVU4Hr1G029660.3 , HORVU4Hr1G029660.2 , HORVU4Hr1G029660.1
Wheat TraesCS3B02G039000 , TraesCS3D02G036100 , TraesCS4B02G149400 , TraesCS4D02G150300 , TraesCS4D02G150300 , TraesCS3A02G044800 , TraesCS4A02G163500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G112900 expressed protein -
2 Sobic.003G339200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
4 Sobic.002G052100 early light-induced protein, chloroplast precursor, putative, expressed -
5 Sobic.003G162400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G181100 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@SCARECROW, putative, expressed -
7 Sobic.004G282900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
8 Sobic.004G214800 receptor-like protein kinase 5 precursor, putative, expressed -
9 Sobic.010G183600 bZIP transcription factor domain containing protein, expressed K16241: transcription factor HY5
10 Sobic.002G052000 early light-induced protein, chloroplast precursor, putative, expressed -
11 Sobic.002G338800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
12 Sobic.003G355500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
13 Sobic.003G440300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.005G002400 expressed protein -
15 Sobic.009G197800 O-methyltransferase, putative, expressed -
16 Sobic.006G150800 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
17 Sobic.003G150500 uncharacterized aarF domain-containing protein kinase 4, putative, expressed K08869: ADCK, aarF domain-containing kinase
18 Sobic.007G065600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid synthesis regulator CarF, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
19 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
20 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -


Gene co-expression network
sample Sobic005G176100 Sobic005G176100 Sobic001G112900 Sobic001G112900 Sobic005G176100--Sobic001G112900 Sobic003G339200 Sobic003G339200 Sobic005G176100--Sobic003G339200 Sobic004G344600 Sobic004G344600 Sobic005G176100--Sobic004G344600 Sobic002G052100 Sobic002G052100 Sobic005G176100--Sobic002G052100 Sobic003G162400 Sobic003G162400 Sobic005G176100--Sobic003G162400 Sobic001G181100 Sobic001G181100 Sobic005G176100--Sobic001G181100 Sobic004G282900 Sobic004G282900 Sobic005G176100--Sobic004G282900 Sobic004G214800 Sobic004G214800 Sobic005G176100--Sobic004G214800 Sobic010G183600 Sobic010G183600 Sobic005G176100--Sobic010G183600 Sobic001G112900--Sobic003G339200 Sobic001G112900--Sobic004G344600 Sobic003G304300 Sobic003G304300 Sobic001G112900--Sobic003G304300 Sobic002G161400 Sobic002G161400 Sobic001G112900--Sobic002G161400 Sobic010G113200 Sobic010G113200 Sobic001G112900--Sobic010G113200 Sobic005G002400 Sobic005G002400 Sobic001G112900--Sobic005G002400 Sobic006G191500 Sobic006G191500 Sobic001G112900--Sobic006G191500 Sobic001G112900--Sobic003G162400 Sobic010G104700 Sobic010G104700 Sobic001G112900--Sobic010G104700 Sobic003G339200--Sobic001G112900 Sobic003G339200--Sobic004G344600 Sobic003G339200--Sobic002G161400 Sobic003G339200--Sobic003G304300 Sobic003G339200--Sobic010G113200 Sobic009G246400 Sobic009G246400 Sobic003G339200--Sobic009G246400 Sobic003G339200--Sobic003G162400 Sobic003G339200--Sobic006G191500 Sobic003G339200--Sobic010G104700 Sobic004G344600--Sobic002G161400 Sobic004G344600--Sobic001G112900 Sobic004G344600--Sobic003G339200 Sobic004G344600--Sobic003G304300 Sobic004G344600--Sobic006G191500 Sobic004G344600--Sobic010G104700 Sobic001G485100 Sobic001G485100 Sobic004G344600--Sobic001G485100 Sobic004G128900 Sobic004G128900 Sobic004G344600--Sobic004G128900 Sobic004G344600--Sobic009G246400 Sobic002G052000 Sobic002G052000 Sobic002G052100--Sobic002G052000 Sobic002G052100--Sobic001G181100 Sobic002G052100--Sobic004G214800 Sobic002G052100--Sobic005G002400 Sobic003G175800 Sobic003G175800 Sobic002G052100--Sobic003G175800 Sobic003G154400 Sobic003G154400 Sobic002G052100--Sobic003G154400 Sobic006G020300 Sobic006G020300 Sobic002G052100--Sobic006G020300 Sobic003G326000 Sobic003G326000 Sobic002G052100--Sobic003G326000 Sobic010G271800 Sobic010G271800 Sobic002G052100--Sobic010G271800 Sobic003G162400--Sobic001G112900 Sobic003G162400--Sobic003G339200 Sobic003G162400--Sobic004G344600 Sobic003G162400--Sobic005G002400 Sobic003G162400--Sobic010G113200 Sobic003G162400--Sobic002G161400 Sobic003G162400--Sobic003G326000 Sobic003G440300 Sobic003G440300 Sobic003G162400--Sobic003G440300 Sobic003G162400--Sobic003G304300 Sobic001G181100--Sobic002G052100 Sobic001G181100--Sobic005G002400 Sobic001G181100--Sobic003G326000 Sobic001G181100--Sobic010G271800 Sobic001G181100--Sobic004G214800 Sobic001G181100--Sobic002G052000 Sobic001G181100--Sobic003G175800 Sobic008G002400 Sobic008G002400 Sobic001G181100--Sobic008G002400 Sobic001G181100--Sobic006G020300 Sobic004G282900--Sobic002G052000 Sobic003G188200 Sobic003G188200 Sobic004G282900--Sobic003G188200 Sobic004G323400 Sobic004G323400 Sobic004G282900--Sobic004G323400 Sobic009G245000 Sobic009G245000 Sobic004G282900--Sobic009G245000 Sobic004G282900--Sobic002G052100 Sobic004G282900--Sobic001G181100 Sobic001G104900 Sobic001G104900 Sobic004G282900--Sobic001G104900 Sobic004G282900--Sobic005G002400 Sobic002G338800 Sobic002G338800 Sobic004G282900--Sobic002G338800 Sobic004G214800--Sobic003G326000 Sobic004G214800--Sobic002G052100 Sobic004G214800--Sobic001G181100 Sobic004G214800--Sobic010G271800 Sobic004G214800--Sobic005G002400 Sobic004G214800--Sobic001G112900 Sobic004G214800--Sobic006G020300 Sobic004G214800--Sobic003G339200 Sobic004G214800--Sobic003G175800 Sobic010G183600--Sobic003G440300 Sobic010G183600--Sobic001G112900 Sobic009G016000 Sobic009G016000 Sobic010G183600--Sobic009G016000 Sobic001G313000 Sobic001G313000 Sobic010G183600--Sobic001G313000 Sobic006G150800 Sobic006G150800 Sobic010G183600--Sobic006G150800 Sobic010G183600--Sobic005G176100 Sobic010G183600--Sobic003G339200 Sobic006G154800 Sobic006G154800 Sobic010G183600--Sobic006G154800 Sobic007G121300 Sobic007G121300 Sobic010G183600--Sobic007G121300
Octagon: transcription factors


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