Gene annotation
Transcriptome id Sobic.001G292000.2
Synonym Sb01g028540
Functional annotation haloacid dehalogenase-like hydrolase family protein, putative, expressed
UniProt A0A1Z5S869
Pfam PF13419
Panther DB PTHR18901 PTHR18901:SF42
NCBI CDD KOG2914; Predicted haloacid-halidohydrolase and related hydrolases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38740 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os10g41930.1 : haloacid dehalogenase-like hydrolase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a003442
Brachypodium KQJ97876 , KQJ97875 , KQJ97874
Barley HORVU1Hr1G054430.10 , HORVU1Hr1G054430.7 , HORVU1Hr1G054430.6 , HORVU1Hr1G054430.5 , HORVU1Hr1G054430.4 , HORVU1Hr1G054430.3 , HORVU1Hr1G054430.2 , HORVU1Hr1G054430.1 , HORVU1Hr1G054430.9 , HORVU1Hr1G054430.8
Wheat TraesCS1D02G216400 , TraesCS1B02G227100 , TraesCS1A02G213600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G292000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G313900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed -
2 Sobic.009G190600 oryzain alpha chain precursor, putative, expressed -
3 Sobic.005G062700 nifU, putative, expressed -
4 Sobic.003G437800 abscisic stress-ripening, putative, expressed -
5 Sobic.003G051000 expressed protein -
6 Sobic.003G425300 Phycoerythrobilin ferredoxin oxidoreductase(PubMedID : 24906815)@phycoerythrobilin ferredoxin oxidoreductase, putative, expressed K08101: phytochromobilin:ferredoxin oxidoreductase
7 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
8 Sobic.001G104900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@peptidase, M50 family, putative, expressed -
9 Sobic.009G129800 endo-1,3@1,4-beta-D-glucanase precursor, putative, expressed -
10 Sobic.010G046700 ABC transporter, ATP-binding protein, putative, expressed -
11 Sobic.001G057700 heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
12 Sobic.007G146400 chaperonin Cpn60/TCP-1, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
13 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
14 Sobic.007G079400 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
15 Sobic.004G323400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine esterase family protein, putative, expressed -
16 Sobic.003G373600 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
17 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
18 Sobic.001G412800 IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.010G251300 OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed K08869: ADCK, aarF domain-containing kinase
20 Sobic.001G064200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G292000 Sobic001G292000 Sobic003G313900 Sobic003G313900 Sobic001G292000--Sobic003G313900 Sobic009G190600 Sobic009G190600 Sobic001G292000--Sobic009G190600 Sobic005G062700 Sobic005G062700 Sobic001G292000--Sobic005G062700 Sobic003G437800 Sobic003G437800 Sobic001G292000--Sobic003G437800 Sobic003G051000 Sobic003G051000 Sobic001G292000--Sobic003G051000 Sobic003G425300 Sobic003G425300 Sobic001G292000--Sobic003G425300 Sobic008G089900 Sobic008G089900 Sobic001G292000--Sobic008G089900 Sobic001G104900 Sobic001G104900 Sobic001G292000--Sobic001G104900 Sobic009G129800 Sobic009G129800 Sobic001G292000--Sobic009G129800 Sobic003G313900--Sobic001G292000 Sobic006G066800 Sobic006G066800 Sobic003G313900--Sobic006G066800 Sobic001G498000 Sobic001G498000 Sobic003G313900--Sobic001G498000 Sobic009G190700 Sobic009G190700 Sobic003G313900--Sobic009G190700 Sobic002G381700 Sobic002G381700 Sobic003G313900--Sobic002G381700 Sobic004G323400 Sobic004G323400 Sobic003G313900--Sobic004G323400 Sobic002G417300 Sobic002G417300 Sobic003G313900--Sobic002G417300 Sobic003G339700 Sobic003G339700 Sobic003G313900--Sobic003G339700 Sobic008G187100 Sobic008G187100 Sobic003G313900--Sobic008G187100 Sobic009G190600--Sobic001G292000 Sobic007G108400 Sobic007G108400 Sobic009G190600--Sobic007G108400 Sobic002G072400 Sobic002G072400 Sobic009G190600--Sobic002G072400 Sobic007G079400 Sobic007G079400 Sobic009G190600--Sobic007G079400 Sobic008G114300 Sobic008G114300 Sobic009G190600--Sobic008G114300 Sobic002G128900 Sobic002G128900 Sobic009G190600--Sobic002G128900 Sobic002G200900 Sobic002G200900 Sobic009G190600--Sobic002G200900 Sobic004G238200 Sobic004G238200 Sobic009G190600--Sobic004G238200 Sobic002G349100 Sobic002G349100 Sobic009G190600--Sobic002G349100 Sobic009G225600 Sobic009G225600 Sobic005G062700--Sobic009G225600 Sobic001G015200 Sobic001G015200 Sobic005G062700--Sobic001G015200 Sobic002G047400 Sobic002G047400 Sobic005G062700--Sobic002G047400 Sobic001G303200 Sobic001G303200 Sobic005G062700--Sobic001G303200 Sobic006G221000 Sobic006G221000 Sobic005G062700--Sobic006G221000 Sobic001G509200 Sobic001G509200 Sobic005G062700--Sobic001G509200 Sobic005G172400 Sobic005G172400 Sobic005G062700--Sobic005G172400 Sobic007G108900 Sobic007G108900 Sobic005G062700--Sobic007G108900 Sobic004G305900 Sobic004G305900 Sobic005G062700--Sobic004G305900 Sobic003G397600 Sobic003G397600 Sobic003G437800--Sobic003G397600 Sobic002G001000 Sobic002G001000 Sobic003G437800--Sobic002G001000 Sobic003G437800--Sobic001G292000 Sobic006G145700 Sobic006G145700 Sobic003G437800--Sobic006G145700 Sobic002G072100 Sobic002G072100 Sobic003G437800--Sobic002G072100 Sobic003G437800--Sobic002G072400 Sobic010G177800 Sobic010G177800 Sobic003G437800--Sobic010G177800 Sobic009G187400 Sobic009G187400 Sobic003G437800--Sobic009G187400 Sobic004G207400 Sobic004G207400 Sobic003G437800--Sobic004G207400 Sobic007G164000 Sobic007G164000 Sobic003G051000--Sobic007G164000 Sobic001G057700 Sobic001G057700 Sobic003G051000--Sobic001G057700 Sobic004G169000 Sobic004G169000 Sobic003G051000--Sobic004G169000 Sobic005G084800 Sobic005G084800 Sobic003G051000--Sobic005G084800 Sobic010G236300 Sobic010G236300 Sobic003G051000--Sobic010G236300 Sobic003G051000--Sobic001G498000 Sobic003G043300 Sobic003G043300 Sobic003G051000--Sobic003G043300 Sobic002G187700 Sobic002G187700 Sobic003G051000--Sobic002G187700 Sobic003G355900 Sobic003G355900 Sobic003G051000--Sobic003G355900 Sobic003G425300--Sobic004G323400 Sobic003G425300--Sobic002G417300 Sobic002G295100 Sobic002G295100 Sobic003G425300--Sobic002G295100 Sobic003G373600 Sobic003G373600 Sobic003G425300--Sobic003G373600 Sobic005G132000 Sobic005G132000 Sobic003G425300--Sobic005G132000 Sobic003G277400 Sobic003G277400 Sobic003G425300--Sobic003G277400 Sobic003G426900 Sobic003G426900 Sobic003G425300--Sobic003G426900 Sobic003G428600 Sobic003G428600 Sobic003G425300--Sobic003G428600 Sobic003G440300 Sobic003G440300 Sobic003G425300--Sobic003G440300 Sobic006G083800 Sobic006G083800 Sobic008G089900--Sobic006G083800 Sobic009G162600 Sobic009G162600 Sobic008G089900--Sobic009G162600 Sobic004G103000 Sobic004G103000 Sobic008G089900--Sobic004G103000 Sobic002G204200 Sobic002G204200 Sobic008G089900--Sobic002G204200 Sobic008G089900--Sobic002G001000 Sobic001G414500 Sobic001G414500 Sobic008G089900--Sobic001G414500 Sobic001G243200 Sobic001G243200 Sobic008G089900--Sobic001G243200 Sobic008G089900--Sobic009G187400 Sobic009G207300 Sobic009G207300 Sobic008G089900--Sobic009G207300 Sobic002G338800 Sobic002G338800 Sobic001G104900--Sobic002G338800 Sobic001G104900--Sobic004G323400 Sobic009G245000 Sobic009G245000 Sobic001G104900--Sobic009G245000 Sobic001G112900 Sobic001G112900 Sobic001G104900--Sobic001G112900 Sobic001G313000 Sobic001G313000 Sobic001G104900--Sobic001G313000 Sobic006G041000 Sobic006G041000 Sobic001G104900--Sobic006G041000 Sobic002G052000 Sobic002G052000 Sobic001G104900--Sobic002G052000 Sobic001G104900--Sobic002G295100 Sobic003G186800 Sobic003G186800 Sobic001G104900--Sobic003G186800 Sobic009G129800--Sobic001G292000 Sobic009G258100 Sobic009G258100 Sobic009G129800--Sobic009G258100 Sobic009G129800--Sobic003G425300 Sobic010G165500 Sobic010G165500 Sobic009G129800--Sobic010G165500 Sobic004G057200 Sobic004G057200 Sobic009G129800--Sobic004G057200 Sobic001G412800 Sobic001G412800 Sobic009G129800--Sobic001G412800 Sobic006G261300 Sobic006G261300 Sobic009G129800--Sobic006G261300 Sobic009G129800--Sobic002G204200 Sobic009G129800--Sobic008G089900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.