Gene annotation
Transcriptome id Sobic.003G313900.1,Sobic.003G313900.4,Sobic.003G313900.3,Sobic.003G313900.2
Synonym Sb03g036170
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
jacalin-like lectin domain containing protein, expressed
UniProt A0A1B6Q6F0 , A0A1B6Q6E4
Pfam PF01419
Panther DB PTHR23244 PTHR23244:SF249
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19715 : Mannose-binding lectin superfamily protein
RAP-DB (Rice) LOC_Os05g43240.3 : jacalin-like lectin domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK05511 , KQK10019
Barley HORVU3Hr1G075960.8 , HORVU3Hr1G075960.9 , HORVU3Hr1G075960.2 , HORVU3Hr1G075960.3 , HORVU3Hr1G075960.1 , HORVU3Hr1G075960.6 , HORVU3Hr1G075960.7 , HORVU3Hr1G075960.4 , HORVU3Hr1G075960.5 , HORVU3Hr1G075960.10 , HORVU3Hr1G075960.11 , HORVU3Hr1G075960.12 , HORVU3Hr1G075960.13 , HORVU3Hr1G075960.14 , HORVU3Hr1G075960.15 , HORVU3Hr1G075960.16
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.003G313900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G292000 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
2 Sobic.006G066800 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
3 Sobic.001G498000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
4 Sobic.009G190700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed -
5 Sobic.002G381700 WD-40 repeat family protein, putative, expressed -
6 Sobic.004G323400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine esterase family protein, putative, expressed -
7 Sobic.002G417300 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
8 Sobic.003G339700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
9 Sobic.008G187100 early-responsive to dehydration protein-related, putative, expressed -
10 Sobic.006G221000 starch synthase 3(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@soluble starch synthase 3, chloroplast precursor, putative, expressed -
11 Sobic.001G426800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, expressed -
12 Sobic.002G322000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
13 Sobic.003G425300 Phycoerythrobilin ferredoxin oxidoreductase(PubMedID : 24906815)@phycoerythrobilin ferredoxin oxidoreductase, putative, expressed K08101: phytochromobilin:ferredoxin oxidoreductase
14 Sobic.003G269300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
15 Sobic.003G051000 expressed protein -
16 Sobic.002G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
17 Sobic.001G496300 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
18 Sobic.001G391300 "Expressed in drought, cold and heat"(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
19 Sobic.002G341000 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
20 Sobic.005G062700 nifU, putative, expressed -


Gene co-expression network
sample Sobic003G313900 Sobic003G313900 Sobic001G292000 Sobic001G292000 Sobic003G313900--Sobic001G292000 Sobic006G066800 Sobic006G066800 Sobic003G313900--Sobic006G066800 Sobic001G498000 Sobic001G498000 Sobic003G313900--Sobic001G498000 Sobic009G190700 Sobic009G190700 Sobic003G313900--Sobic009G190700 Sobic002G381700 Sobic002G381700 Sobic003G313900--Sobic002G381700 Sobic004G323400 Sobic004G323400 Sobic003G313900--Sobic004G323400 Sobic002G417300 Sobic002G417300 Sobic003G313900--Sobic002G417300 Sobic003G339700 Sobic003G339700 Sobic003G313900--Sobic003G339700 Sobic008G187100 Sobic008G187100 Sobic003G313900--Sobic008G187100 Sobic001G292000--Sobic003G313900 Sobic009G190600 Sobic009G190600 Sobic001G292000--Sobic009G190600 Sobic005G062700 Sobic005G062700 Sobic001G292000--Sobic005G062700 Sobic003G437800 Sobic003G437800 Sobic001G292000--Sobic003G437800 Sobic003G051000 Sobic003G051000 Sobic001G292000--Sobic003G051000 Sobic003G425300 Sobic003G425300 Sobic001G292000--Sobic003G425300 Sobic008G089900 Sobic008G089900 Sobic001G292000--Sobic008G089900 Sobic001G104900 Sobic001G104900 Sobic001G292000--Sobic001G104900 Sobic009G129800 Sobic009G129800 Sobic001G292000--Sobic009G129800 Sobic002G322000 Sobic002G322000 Sobic006G066800--Sobic002G322000 Sobic010G047700 Sobic010G047700 Sobic006G066800--Sobic010G047700 Sobic004G206100 Sobic004G206100 Sobic006G066800--Sobic004G206100 Sobic004G269800 Sobic004G269800 Sobic006G066800--Sobic004G269800 Sobic001G015200 Sobic001G015200 Sobic006G066800--Sobic001G015200 Sobic008G088821 Sobic008G088821 Sobic006G066800--Sobic008G088821 Sobic006G140500 Sobic006G140500 Sobic006G066800--Sobic006G140500 Sobic004G305900 Sobic004G305900 Sobic006G066800--Sobic004G305900 Sobic002G159100 Sobic002G159100 Sobic006G066800--Sobic002G159100 Sobic004G219400 Sobic004G219400 Sobic001G498000--Sobic004G219400 Sobic006G130300 Sobic006G130300 Sobic001G498000--Sobic006G130300 Sobic003G391200 Sobic003G391200 Sobic001G498000--Sobic003G391200 Sobic008G115900 Sobic008G115900 Sobic001G498000--Sobic008G115900 Sobic002G382700 Sobic002G382700 Sobic001G498000--Sobic002G382700 Sobic001G017300 Sobic001G017300 Sobic001G498000--Sobic001G017300 Sobic006G158100 Sobic006G158100 Sobic001G498000--Sobic006G158100 Sobic006G221000 Sobic006G221000 Sobic001G498000--Sobic006G221000 Sobic004G082300 Sobic004G082300 Sobic001G498000--Sobic004G082300 Sobic008G059100 Sobic008G059100 Sobic009G190700--Sobic008G059100 Sobic009G190700--Sobic003G313900 Sobic007G164000 Sobic007G164000 Sobic009G190700--Sobic007G164000 Sobic003G354900 Sobic003G354900 Sobic009G190700--Sobic003G354900 Sobic001G409300 Sobic001G409300 Sobic009G190700--Sobic001G409300 Sobic009G190700--Sobic003G051000 Sobic002G187700 Sobic002G187700 Sobic009G190700--Sobic002G187700 Sobic001G070000 Sobic001G070000 Sobic009G190700--Sobic001G070000 Sobic003G242000 Sobic003G242000 Sobic009G190700--Sobic003G242000 Sobic002G381700--Sobic004G219400 Sobic002G295100 Sobic002G295100 Sobic002G381700--Sobic002G295100 Sobic002G381700--Sobic001G498000 Sobic008G064700 Sobic008G064700 Sobic002G381700--Sobic008G064700 Sobic002G381700--Sobic003G425300 Sobic003G269300 Sobic003G269300 Sobic002G381700--Sobic003G269300 Sobic002G381700--Sobic003G313900 Sobic002G381700--Sobic004G323400 Sobic001G057700 Sobic001G057700 Sobic002G381700--Sobic001G057700 Sobic004G323400--Sobic002G417300 Sobic004G323400--Sobic002G295100 Sobic003G188200 Sobic003G188200 Sobic004G323400--Sobic003G188200 Sobic004G323400--Sobic001G104900 Sobic003G440300 Sobic003G440300 Sobic004G323400--Sobic003G440300 Sobic004G323400--Sobic003G425300 Sobic006G041000 Sobic006G041000 Sobic004G323400--Sobic006G041000 Sobic004G282900 Sobic004G282900 Sobic004G323400--Sobic004G282900 Sobic002G291800 Sobic002G291800 Sobic004G323400--Sobic002G291800 Sobic002G417300--Sobic004G323400 Sobic002G417300--Sobic003G339700 Sobic007G146400 Sobic007G146400 Sobic002G417300--Sobic007G146400 Sobic001G160800 Sobic001G160800 Sobic002G417300--Sobic001G160800 Sobic002G417300--Sobic003G425300 Sobic002G275100 Sobic002G275100 Sobic002G417300--Sobic002G275100 Sobic002G417300--Sobic002G295100 Sobic007G121300 Sobic007G121300 Sobic002G417300--Sobic007G121300 Sobic004G189200 Sobic004G189200 Sobic002G417300--Sobic004G189200 Sobic003G339700--Sobic002G417300 Sobic003G381700 Sobic003G381700 Sobic003G339700--Sobic003G381700 Sobic003G339700--Sobic008G187100 Sobic003G339700--Sobic007G146400 Sobic003G339700--Sobic001G160800 Sobic003G334000 Sobic003G334000 Sobic003G339700--Sobic003G334000 Sobic003G339700--Sobic001G057700 Sobic009G069300 Sobic009G069300 Sobic003G339700--Sobic009G069300 Sobic003G339700--Sobic006G066800 Sobic008G187100--Sobic003G381700 Sobic003G186900 Sobic003G186900 Sobic008G187100--Sobic003G186900 Sobic008G187100--Sobic003G339700 Sobic005G106600 Sobic005G106600 Sobic008G187100--Sobic005G106600 Sobic008G187100--Sobic001G057700 Sobic001G352400 Sobic001G352400 Sobic008G187100--Sobic001G352400 Sobic003G166200 Sobic003G166200 Sobic008G187100--Sobic003G166200 Sobic004G322700 Sobic004G322700 Sobic008G187100--Sobic004G322700 Sobic008G187100--Sobic007G146400
Octagon: transcription factors


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