Gene annotation
Transcriptome id Sobic.001G496300.2
Synonym ATARD2, Sb01g046360
Functional annotation 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed
UniProt A0A1Z5SBC3 , C5WWY0
Pfam PF07883
Panther DB PTHR23418 PTHR23418:SF0
NCBI CDD KOG2107; Uncharacterized conserved protein, contains double-stranded beta-helix domain
KEGG Orthology K08967; mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Gene Ontology GO:0010309; acireductone dioxygenase [iron(II)-requiring] activity


Orthologs (automatic annotation)
TAIR AT4G14710 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os03g06620.1 : 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed
MaizeGDB (Corn) Zm00025a000763
Brachypodium KQK15715 , KQK23527
Barley HORVU4Hr1G073630.3 , HORVU4Hr1G073630.2 , HORVU4Hr1G073630.1 , HORVU4Hr1G073630.6 , HORVU4Hr1G073630.5 , HORVU4Hr1G073630.4
Wheat TraesCS4D02G276400 , TraesCS4A02G027800 , TraesCS4B02G278000 , TraesCS4D02G276400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G470900 sulfate transporter, putative, expressed K17469: sulfate transporter 2, low-affinity
2 Sobic.009G017800 glutathione S-transferase, N-terminal domain containing protein, expressed -
3 Sobic.003G313900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed -
4 Sobic.006G220200 CPuORF12 - conserved peptide uORF-containing transcript, expressed K17839: PAO4, PAO3, polyamine oxidase
5 Sobic.006G066800 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
6 Sobic.003G125701 - -
7 Sobic.001G407600 plastid-targeted omega-3 fatty acid desaturase(PubMedID : 31661847)@omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed K10257: FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase
8 Sobic.006G097200 cation transport regulator-like protein 1, putative, expressed -
9 Sobic.010G047700 starch synthase, putative, expressed K00703: starch synthase
10 Sobic.001G301800 CS domain containing protein, putative, expressed -
11 Sobic.002G421300 stress responsive protein, putative, expressed -
12 Sobic.001G076900 Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed -
13 Sobic.002G086800 expressed protein -
14 Sobic.001G020100 expressed protein -
15 Sobic.002G420900 stress responsive protein, putative, expressed -
16 Sobic.004G097300 phosphoethanolamine/phosphocholine phosphatase, putative, expressed K13248: pyridoxal phosphate phosphatase PHOSPHO2
17 Sobic.003G238000 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
18 Sobic.001G412800 IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.006G130300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
20 Sobic.007G133900 terpene synthase, putative, expressed -


Gene co-expression network
sample Sobic001G496300 Sobic001G496300 Sobic001G470900 Sobic001G470900 Sobic001G496300--Sobic001G470900 Sobic009G017800 Sobic009G017800 Sobic001G496300--Sobic009G017800 Sobic003G313900 Sobic003G313900 Sobic001G496300--Sobic003G313900 Sobic006G220200 Sobic006G220200 Sobic001G496300--Sobic006G220200 Sobic006G066800 Sobic006G066800 Sobic001G496300--Sobic006G066800 Sobic003G125701 Sobic003G125701 Sobic001G496300--Sobic003G125701 Sobic001G407600 Sobic001G407600 Sobic001G496300--Sobic001G407600 Sobic006G097200 Sobic006G097200 Sobic001G496300--Sobic006G097200 Sobic010G047700 Sobic010G047700 Sobic001G496300--Sobic010G047700 Sobic001G087700 Sobic001G087700 Sobic001G470900--Sobic001G087700 Sobic002G086800 Sobic002G086800 Sobic001G470900--Sobic002G086800 Sobic001G470900--Sobic001G496300 Sobic006G220300 Sobic006G220300 Sobic001G470900--Sobic006G220300 Sobic001G110900 Sobic001G110900 Sobic001G470900--Sobic001G110900 Sobic004G058700 Sobic004G058700 Sobic001G470900--Sobic004G058700 Sobic003G389700 Sobic003G389700 Sobic001G470900--Sobic003G389700 Sobic001G498000 Sobic001G498000 Sobic001G470900--Sobic001G498000 Sobic004G332100 Sobic004G332100 Sobic001G470900--Sobic004G332100 Sobic009G015700 Sobic009G015700 Sobic009G017800--Sobic009G015700 Sobic001G301800 Sobic001G301800 Sobic009G017800--Sobic001G301800 Sobic009G017800--Sobic001G496300 Sobic001G020100 Sobic001G020100 Sobic009G017800--Sobic001G020100 Sobic001G447600 Sobic001G447600 Sobic009G017800--Sobic001G447600 Sobic009G017800--Sobic006G097200 Sobic003G380600 Sobic003G380600 Sobic009G017800--Sobic003G380600 Sobic010G026925 Sobic010G026925 Sobic009G017800--Sobic010G026925 Sobic009G017800--Sobic001G407600 Sobic001G292000 Sobic001G292000 Sobic003G313900--Sobic001G292000 Sobic003G313900--Sobic006G066800 Sobic003G313900--Sobic001G498000 Sobic009G190700 Sobic009G190700 Sobic003G313900--Sobic009G190700 Sobic002G381700 Sobic002G381700 Sobic003G313900--Sobic002G381700 Sobic004G323400 Sobic004G323400 Sobic003G313900--Sobic004G323400 Sobic002G417300 Sobic002G417300 Sobic003G313900--Sobic002G417300 Sobic003G339700 Sobic003G339700 Sobic003G313900--Sobic003G339700 Sobic008G187100 Sobic008G187100 Sobic003G313900--Sobic008G187100 Sobic006G220200--Sobic006G220300 Sobic010G092600 Sobic010G092600 Sobic006G220200--Sobic010G092600 Sobic001G391300 Sobic001G391300 Sobic006G220200--Sobic001G391300 Sobic002G148700 Sobic002G148700 Sobic006G220200--Sobic002G148700 Sobic002G216400 Sobic002G216400 Sobic006G220200--Sobic002G216400 Sobic006G220200--Sobic001G496300 Sobic003G238000 Sobic003G238000 Sobic006G220200--Sobic003G238000 Sobic006G220200--Sobic001G110900 Sobic009G155700 Sobic009G155700 Sobic006G220200--Sobic009G155700 Sobic002G322000 Sobic002G322000 Sobic006G066800--Sobic002G322000 Sobic006G066800--Sobic010G047700 Sobic004G206100 Sobic004G206100 Sobic006G066800--Sobic004G206100 Sobic004G269800 Sobic004G269800 Sobic006G066800--Sobic004G269800 Sobic001G015200 Sobic001G015200 Sobic006G066800--Sobic001G015200 Sobic008G088821 Sobic008G088821 Sobic006G066800--Sobic008G088821 Sobic006G140500 Sobic006G140500 Sobic006G066800--Sobic006G140500 Sobic004G305900 Sobic004G305900 Sobic006G066800--Sobic004G305900 Sobic002G159100 Sobic002G159100 Sobic006G066800--Sobic002G159100 Sobic001G173500 Sobic001G173500 Sobic003G125701--Sobic001G173500 Sobic001G033100 Sobic001G033100 Sobic003G125701--Sobic001G033100 Sobic003G125701--Sobic001G292000 Sobic009G210200 Sobic009G210200 Sobic003G125701--Sobic009G210200 Sobic002G279700 Sobic002G279700 Sobic003G125701--Sobic002G279700 Sobic003G125701--Sobic001G496300 Sobic001G357300 Sobic001G357300 Sobic003G125701--Sobic001G357300 Sobic007G079400 Sobic007G079400 Sobic003G125701--Sobic007G079400 Sobic008G015800 Sobic008G015800 Sobic003G125701--Sobic008G015800 Sobic001G489000 Sobic001G489000 Sobic001G407600--Sobic001G489000 Sobic005G172400 Sobic005G172400 Sobic001G407600--Sobic005G172400 Sobic001G202600 Sobic001G202600 Sobic001G407600--Sobic001G202600 Sobic002G051100 Sobic002G051100 Sobic001G407600--Sobic002G051100 Sobic001G407600--Sobic002G279700 Sobic009G172600 Sobic009G172600 Sobic001G407600--Sobic009G172600 Sobic001G407600--Sobic001G020100 Sobic004G268000 Sobic004G268000 Sobic001G407600--Sobic004G268000 Sobic009G140600 Sobic009G140600 Sobic001G407600--Sobic009G140600 Sobic006G097200--Sobic002G279700 Sobic010G153900 Sobic010G153900 Sobic006G097200--Sobic010G153900 Sobic010G023700 Sobic010G023700 Sobic006G097200--Sobic010G023700 Sobic006G097200--Sobic001G020100 Sobic002G226400 Sobic002G226400 Sobic006G097200--Sobic002G226400 Sobic002G421300 Sobic002G421300 Sobic006G097200--Sobic002G421300 Sobic001G129000 Sobic001G129000 Sobic006G097200--Sobic001G129000 Sobic008G188600 Sobic008G188600 Sobic006G097200--Sobic008G188600 Sobic007G140800 Sobic007G140800 Sobic006G097200--Sobic007G140800 Sobic010G047700--Sobic006G066800 Sobic010G047700--Sobic004G206100 Sobic006G063900 Sobic006G063900 Sobic010G047700--Sobic006G063900 Sobic010G047700--Sobic001G015200 Sobic004G028300 Sobic004G028300 Sobic010G047700--Sobic004G028300 Sobic003G370000 Sobic003G370000 Sobic010G047700--Sobic003G370000 Sobic001G167900 Sobic001G167900 Sobic010G047700--Sobic001G167900 Sobic010G047700--Sobic008G088821 Sobic004G359600 Sobic004G359600 Sobic010G047700--Sobic004G359600
Octagon: transcription factors


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