Gene annotation
Transcriptome id Sobic.006G097200.1
Synonym Sb06g018190
Functional annotation cation transport regulator-like protein 1, putative, expressed
UniProt C5Y9B7
Pfam PF04752
Panther DB PTHR12192 PTHR12192:SF1
NCBI CDD KOG3182; Predicted cation transporter
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G44790 : ChaC-like family protein
RAP-DB (Rice) LOC_Os04g37580.1 : cation transport regulator-like protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a056160
Brachypodium KQJ82867
Barley -
Wheat TraesCS2D02G314600 , TraesCS2A02G316700 , TraesCS2B02G334800
Populus -


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cDNA sequences
Sobic.006G097200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G279700 3-dehydroquinate synthase, putative, expressed K01735: 3-dehydroquinate synthase
2 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
3 Sobic.010G023700 Transketolase(PubMedID : 26186930)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
4 Sobic.001G020100 expressed protein -
5 Sobic.002G226400 EF hand family protein, putative, expressed -
6 Sobic.002G421300 stress responsive protein, putative, expressed -
7 Sobic.001G129000 DnaK family protein, putative, expressed -
8 Sobic.008G188600 glyoxalase family protein, putative, expressed -
9 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
10 Sobic.004G033700 expressed protein -
11 Sobic.007G033800 basic helix-loop-helix DND-binding domain containing protein, expressed -
12 Sobic.008G115900 mitochondrial carrier protein, putative, expressed -
13 Sobic.002G277100 -(PubMedID : 29017446)@triosephosphate isomerase, chloroplast precursor, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
14 Sobic.001G407600 plastid-targeted omega-3 fatty acid desaturase(PubMedID : 31661847)@omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed K10257: FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase
15 Sobic.006G130300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
16 Sobic.006G008700 bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed K13811: 3'-phosphoadenosine 5'-phosphosulfate synthase
17 Sobic.003G303700 Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein -
18 Sobic.009G113800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
19 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
20 Sobic.002G339600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha


Gene co-expression network
sample Sobic006G097200 Sobic006G097200 Sobic002G279700 Sobic002G279700 Sobic006G097200--Sobic002G279700 Sobic010G153900 Sobic010G153900 Sobic006G097200--Sobic010G153900 Sobic010G023700 Sobic010G023700 Sobic006G097200--Sobic010G023700 Sobic001G020100 Sobic001G020100 Sobic006G097200--Sobic001G020100 Sobic002G226400 Sobic002G226400 Sobic006G097200--Sobic002G226400 Sobic002G421300 Sobic002G421300 Sobic006G097200--Sobic002G421300 Sobic001G129000 Sobic001G129000 Sobic006G097200--Sobic001G129000 Sobic008G188600 Sobic008G188600 Sobic006G097200--Sobic008G188600 Sobic007G140800 Sobic007G140800 Sobic006G097200--Sobic007G140800 Sobic002G128900 Sobic002G128900 Sobic002G279700--Sobic002G128900 Sobic006G261700 Sobic006G261700 Sobic002G279700--Sobic006G261700 Sobic001G295300 Sobic001G295300 Sobic002G279700--Sobic001G295300 Sobic002G200900 Sobic002G200900 Sobic002G279700--Sobic002G200900 Sobic002G233700 Sobic002G233700 Sobic002G279700--Sobic002G233700 Sobic002G279700--Sobic008G188600 Sobic002G279700--Sobic001G020100 Sobic008G006200 Sobic008G006200 Sobic002G279700--Sobic008G006200 Sobic004G307400 Sobic004G307400 Sobic002G279700--Sobic004G307400 Sobic010G153900--Sobic007G140800 Sobic010G153900--Sobic008G188600 Sobic009G043000 Sobic009G043000 Sobic010G153900--Sobic009G043000 Sobic010G201700 Sobic010G201700 Sobic010G153900--Sobic010G201700 Sobic003G303700 Sobic003G303700 Sobic010G153900--Sobic003G303700 Sobic010G095000 Sobic010G095000 Sobic010G153900--Sobic010G095000 Sobic006G207800 Sobic006G207800 Sobic010G153900--Sobic006G207800 Sobic003G241900 Sobic003G241900 Sobic010G153900--Sobic003G241900 Sobic010G153900--Sobic001G020100 Sobic002G051100 Sobic002G051100 Sobic010G023700--Sobic002G051100 Sobic009G063100 Sobic009G063100 Sobic010G023700--Sobic009G063100 Sobic010G023700--Sobic001G129000 Sobic004G272100 Sobic004G272100 Sobic010G023700--Sobic004G272100 Sobic004G125700 Sobic004G125700 Sobic010G023700--Sobic004G125700 Sobic001G102800 Sobic001G102800 Sobic010G023700--Sobic001G102800 Sobic010G023700--Sobic007G140800 Sobic002G277100 Sobic002G277100 Sobic010G023700--Sobic002G277100 Sobic010G023700--Sobic001G020100 Sobic001G491000 Sobic001G491000 Sobic001G020100--Sobic001G491000 Sobic003G370000 Sobic003G370000 Sobic001G020100--Sobic003G370000 Sobic001G289500 Sobic001G289500 Sobic001G020100--Sobic001G289500 Sobic007G161500 Sobic007G161500 Sobic001G020100--Sobic007G161500 Sobic006G130300 Sobic006G130300 Sobic001G020100--Sobic006G130300 Sobic005G056400 Sobic005G056400 Sobic001G020100--Sobic005G056400 Sobic001G076900 Sobic001G076900 Sobic001G020100--Sobic001G076900 Sobic006G238200 Sobic006G238200 Sobic001G020100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic001G020100--Sobic001G100000 Sobic002G226400--Sobic006G097200 Sobic004G133400 Sobic004G133400 Sobic002G226400--Sobic004G133400 Sobic002G204200 Sobic002G204200 Sobic002G226400--Sobic002G204200 Sobic008G089900 Sobic008G089900 Sobic002G226400--Sobic008G089900 Sobic002G226400--Sobic001G020100 Sobic002G226400--Sobic010G023700 Sobic004G275000 Sobic004G275000 Sobic002G226400--Sobic004G275000 Sobic010G135600 Sobic010G135600 Sobic002G226400--Sobic010G135600 Sobic005G172400 Sobic005G172400 Sobic002G226400--Sobic005G172400 Sobic002G421300--Sobic003G241900 Sobic002G421300--Sobic010G153900 Sobic004G026300 Sobic004G026300 Sobic002G421300--Sobic004G026300 Sobic008G108400 Sobic008G108400 Sobic002G421300--Sobic008G108400 Sobic002G421300--Sobic003G303700 Sobic003G199800 Sobic003G199800 Sobic002G421300--Sobic003G199800 Sobic002G421300--Sobic009G043000 Sobic003G131000 Sobic003G131000 Sobic002G421300--Sobic003G131000 Sobic002G098800 Sobic002G098800 Sobic002G421300--Sobic002G098800 Sobic002G036000 Sobic002G036000 Sobic001G129000--Sobic002G036000 Sobic001G129000--Sobic007G140800 Sobic001G129000--Sobic001G102800 Sobic007G009200 Sobic007G009200 Sobic001G129000--Sobic007G009200 Sobic001G129000--Sobic006G207800 Sobic001G329400 Sobic001G329400 Sobic001G129000--Sobic001G329400 Sobic003G024300 Sobic003G024300 Sobic001G129000--Sobic003G024300 Sobic009G113800 Sobic009G113800 Sobic001G129000--Sobic009G113800 Sobic006G077400 Sobic006G077400 Sobic001G129000--Sobic006G077400 Sobic003G387100 Sobic003G387100 Sobic008G188600--Sobic003G387100 Sobic008G188600--Sobic009G043000 Sobic008G102000 Sobic008G102000 Sobic008G188600--Sobic008G102000 Sobic008G188600--Sobic006G207800 Sobic009G059300 Sobic009G059300 Sobic008G188600--Sobic009G059300 Sobic006G067400 Sobic006G067400 Sobic008G188600--Sobic006G067400 Sobic008G188600--Sobic010G201700 Sobic008G188600--Sobic010G153900 Sobic007G225500 Sobic007G225500 Sobic008G188600--Sobic007G225500 Sobic007G140800--Sobic006G077400 Sobic007G140800--Sobic003G303700 Sobic007G140800--Sobic010G201700 Sobic007G140800--Sobic003G024300 Sobic007G140800--Sobic010G153900 Sobic007G140800--Sobic001G329400 Sobic007G140800--Sobic007G009200 Sobic007G140800--Sobic004G125700 Sobic009G237100 Sobic009G237100 Sobic007G140800--Sobic009G237100
Octagon: transcription factors


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