Gene annotation
Transcriptome id Sobic.002G226400.1
Synonym Sb02g026680, CML38
Functional annotation EF hand family protein, putative, expressed
UniProt C5X2C2
Pfam PF13202
Panther DB PTHR10891 PTHR10891:SF575
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT3G22930 : calmodulin-like 11
RAP-DB (Rice) LOC_Os09g28510.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ90520
Barley HORVU5Hr1G068520.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G226400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G097200 cation transport regulator-like protein 1, putative, expressed -
2 Sobic.004G133400 eukaryotic translation initiation factor 1A, putative, expressed K03236: translation initiation factor 1A
3 Sobic.002G204200 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
4 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
5 Sobic.001G020100 expressed protein -
6 Sobic.010G023700 Transketolase(PubMedID : 26186930)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
7 Sobic.004G275000 heat shock protein DnaJ, putative, expressed -
8 Sobic.010G135600 expressed protein -
9 Sobic.005G172400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PAP fibrillin family domain containing protein, expressed -
10 Sobic.006G220800 -(PubMedID : 26976818)@aminomethyltransferase, putative, expressed K00605: gcvT, aminomethyltransferase
11 Sobic.005G127800 expressed protein -
12 Sobic.001G407600 plastid-targeted omega-3 fatty acid desaturase(PubMedID : 31661847)@omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed K10257: FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase
13 Sobic.009G241100 expressed protein -
14 Sobic.002G421300 stress responsive protein, putative, expressed -
15 Sobic.005G062700 nifU, putative, expressed -
16 Sobic.002G128900 thioesterase family protein, putative, expressed -
17 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
18 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
19 Sobic.007G033800 basic helix-loop-helix DND-binding domain containing protein, expressed -
20 Sobic.001G076900 Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G226400 Sobic002G226400 Sobic006G097200 Sobic006G097200 Sobic002G226400--Sobic006G097200 Sobic004G133400 Sobic004G133400 Sobic002G226400--Sobic004G133400 Sobic002G204200 Sobic002G204200 Sobic002G226400--Sobic002G204200 Sobic008G089900 Sobic008G089900 Sobic002G226400--Sobic008G089900 Sobic001G020100 Sobic001G020100 Sobic002G226400--Sobic001G020100 Sobic010G023700 Sobic010G023700 Sobic002G226400--Sobic010G023700 Sobic004G275000 Sobic004G275000 Sobic002G226400--Sobic004G275000 Sobic010G135600 Sobic010G135600 Sobic002G226400--Sobic010G135600 Sobic005G172400 Sobic005G172400 Sobic002G226400--Sobic005G172400 Sobic002G279700 Sobic002G279700 Sobic006G097200--Sobic002G279700 Sobic010G153900 Sobic010G153900 Sobic006G097200--Sobic010G153900 Sobic006G097200--Sobic010G023700 Sobic006G097200--Sobic001G020100 Sobic006G097200--Sobic002G226400 Sobic002G421300 Sobic002G421300 Sobic006G097200--Sobic002G421300 Sobic001G129000 Sobic001G129000 Sobic006G097200--Sobic001G129000 Sobic008G188600 Sobic008G188600 Sobic006G097200--Sobic008G188600 Sobic007G140800 Sobic007G140800 Sobic006G097200--Sobic007G140800 Sobic002G200700 Sobic002G200700 Sobic004G133400--Sobic002G200700 Sobic004G133400--Sobic002G226400 Sobic003G410100 Sobic003G410100 Sobic004G133400--Sobic003G410100 Sobic009G135900 Sobic009G135900 Sobic004G133400--Sobic009G135900 Sobic004G133400--Sobic008G089900 Sobic009G207300 Sobic009G207300 Sobic004G133400--Sobic009G207300 Sobic005G016500 Sobic005G016500 Sobic004G133400--Sobic005G016500 Sobic009G241100 Sobic009G241100 Sobic004G133400--Sobic009G241100 Sobic002G128900 Sobic002G128900 Sobic004G133400--Sobic002G128900 Sobic002G204200--Sobic008G089900 Sobic007G216100 Sobic007G216100 Sobic002G204200--Sobic007G216100 Sobic004G017800 Sobic004G017800 Sobic002G204200--Sobic004G017800 Sobic002G204200--Sobic002G226400 Sobic001G406100 Sobic001G406100 Sobic002G204200--Sobic001G406100 Sobic010G230500 Sobic010G230500 Sobic002G204200--Sobic010G230500 Sobic001G070000 Sobic001G070000 Sobic002G204200--Sobic001G070000 Sobic004G103000 Sobic004G103000 Sobic002G204200--Sobic004G103000 Sobic003G295900 Sobic003G295900 Sobic002G204200--Sobic003G295900 Sobic006G083800 Sobic006G083800 Sobic008G089900--Sobic006G083800 Sobic009G162600 Sobic009G162600 Sobic008G089900--Sobic009G162600 Sobic008G089900--Sobic004G103000 Sobic008G089900--Sobic002G204200 Sobic002G001000 Sobic002G001000 Sobic008G089900--Sobic002G001000 Sobic001G414500 Sobic001G414500 Sobic008G089900--Sobic001G414500 Sobic001G243200 Sobic001G243200 Sobic008G089900--Sobic001G243200 Sobic009G187400 Sobic009G187400 Sobic008G089900--Sobic009G187400 Sobic008G089900--Sobic009G207300 Sobic001G491000 Sobic001G491000 Sobic001G020100--Sobic001G491000 Sobic003G370000 Sobic003G370000 Sobic001G020100--Sobic003G370000 Sobic001G289500 Sobic001G289500 Sobic001G020100--Sobic001G289500 Sobic007G161500 Sobic007G161500 Sobic001G020100--Sobic007G161500 Sobic006G130300 Sobic006G130300 Sobic001G020100--Sobic006G130300 Sobic005G056400 Sobic005G056400 Sobic001G020100--Sobic005G056400 Sobic001G076900 Sobic001G076900 Sobic001G020100--Sobic001G076900 Sobic006G238200 Sobic006G238200 Sobic001G020100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic001G020100--Sobic001G100000 Sobic002G051100 Sobic002G051100 Sobic010G023700--Sobic002G051100 Sobic009G063100 Sobic009G063100 Sobic010G023700--Sobic009G063100 Sobic010G023700--Sobic001G129000 Sobic004G272100 Sobic004G272100 Sobic010G023700--Sobic004G272100 Sobic004G125700 Sobic004G125700 Sobic010G023700--Sobic004G125700 Sobic001G102800 Sobic001G102800 Sobic010G023700--Sobic001G102800 Sobic010G023700--Sobic007G140800 Sobic002G277100 Sobic002G277100 Sobic010G023700--Sobic002G277100 Sobic010G023700--Sobic001G020100 Sobic005G062700 Sobic005G062700 Sobic004G275000--Sobic005G062700 Sobic001G303200 Sobic001G303200 Sobic004G275000--Sobic001G303200 Sobic006G102000 Sobic006G102000 Sobic004G275000--Sobic006G102000 Sobic007G108900 Sobic007G108900 Sobic004G275000--Sobic007G108900 Sobic004G275000--Sobic001G491000 Sobic001G015200 Sobic001G015200 Sobic004G275000--Sobic001G015200 Sobic003G094100 Sobic003G094100 Sobic004G275000--Sobic003G094100 Sobic004G275000--Sobic001G020100 Sobic004G275000--Sobic009G241100 Sobic010G135600--Sobic001G491000 Sobic002G412100 Sobic002G412100 Sobic010G135600--Sobic002G412100 Sobic002G370600 Sobic002G370600 Sobic010G135600--Sobic002G370600 Sobic004G305800 Sobic004G305800 Sobic010G135600--Sobic004G305800 Sobic010G181300 Sobic010G181300 Sobic010G135600--Sobic010G181300 Sobic010G135600--Sobic006G102000 Sobic009G129300 Sobic009G129300 Sobic010G135600--Sobic009G129300 Sobic010G135600--Sobic001G289500 Sobic003G327000 Sobic003G327000 Sobic010G135600--Sobic003G327000 Sobic001G104600 Sobic001G104600 Sobic005G172400--Sobic001G104600 Sobic005G172400--Sobic001G015200 Sobic003G103300 Sobic003G103300 Sobic005G172400--Sobic003G103300 Sobic005G172400--Sobic005G062700 Sobic010G101000 Sobic010G101000 Sobic005G172400--Sobic010G101000 Sobic004G305900 Sobic004G305900 Sobic005G172400--Sobic004G305900 Sobic005G172400--Sobic001G289500 Sobic001G317800 Sobic001G317800 Sobic005G172400--Sobic001G317800 Sobic002G047400 Sobic002G047400 Sobic005G172400--Sobic002G047400
Octagon: transcription factors


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