Gene annotation
Transcriptome id Sobic.004G133400.1,Sobic.004G133400.2
Synonym Sb04g012700
Functional annotation eukaryotic translation initiation factor 1A, putative, expressed
UniProt C5Y0K9
Pfam PF01176
Panther DB PTHR21668:SF5 PTHR21668
NCBI CDD KOG3403; Translation initiation factor 1A (eIF-1A)
KEGG Orthology K03236; translation initiation factor 1A
Gene Ontology GO:0003723; RNA binding GO:0003743translation initiation factor activity GO:0006413translational initiation


Orthologs (automatic annotation)
TAIR AT2G04520 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os06g23440.1 : eukaryotic translation initiation factor 1A, putative, expressed
MaizeGDB (Corn) Zm00025a019720 , Zm00025a056081 , Zm00025a041503
Brachypodium KQK18245
Barley HORVU7Hr1G082240.1 , HORVU7Hr1G082240.2
Wheat TraesCS7A02G333700
Populus -


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cDNA sequences
Sobic.004G133400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G200700 expressed protein -
2 Sobic.002G226400 EF hand family protein, putative, expressed -
3 Sobic.003G410100 protein kinase domain containing protein, expressed K08819: cyclin-dependent kinase 12/13
4 Sobic.009G135900 cysteine proteinase inhibitor precursor protein, putative, expressed -
5 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
6 Sobic.009G207300 ubiquitin domain-containing protein 1, putative, expressed -
7 Sobic.005G016500 DUF567 domain containing protein, putative, expressed -
8 Sobic.009G241100 expressed protein -
9 Sobic.002G128900 thioesterase family protein, putative, expressed -
10 Sobic.003G224100 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
11 Sobic.001G301800 CS domain containing protein, putative, expressed -
12 Sobic.003G373600 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
13 Sobic.002G001000 transmembrane amino acid transporter protein, putative, expressed -
14 Sobic.002G201900 transporter family protein, putative, expressed -
15 Sobic.002G136100 genetic modifier, putative, expressed -
16 Sobic.003G026600 osFTL8 FT-Like8 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
17 Sobic.005G172400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PAP fibrillin family domain containing protein, expressed -
18 Sobic.001G020100 expressed protein -
19 Sobic.001G076900 Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed -
20 Sobic.003G263001 - -


Gene co-expression network
sample Sobic004G133400 Sobic004G133400 Sobic002G200700 Sobic002G200700 Sobic004G133400--Sobic002G200700 Sobic002G226400 Sobic002G226400 Sobic004G133400--Sobic002G226400 Sobic003G410100 Sobic003G410100 Sobic004G133400--Sobic003G410100 Sobic009G135900 Sobic009G135900 Sobic004G133400--Sobic009G135900 Sobic008G089900 Sobic008G089900 Sobic004G133400--Sobic008G089900 Sobic009G207300 Sobic009G207300 Sobic004G133400--Sobic009G207300 Sobic005G016500 Sobic005G016500 Sobic004G133400--Sobic005G016500 Sobic009G241100 Sobic009G241100 Sobic004G133400--Sobic009G241100 Sobic002G128900 Sobic002G128900 Sobic004G133400--Sobic002G128900 Sobic003G224100 Sobic003G224100 Sobic002G200700--Sobic003G224100 Sobic002G001000 Sobic002G001000 Sobic002G200700--Sobic002G001000 Sobic002G201900 Sobic002G201900 Sobic002G200700--Sobic002G201900 Sobic003G007700 Sobic003G007700 Sobic002G200700--Sobic003G007700 Sobic006G064200 Sobic006G064200 Sobic002G200700--Sobic006G064200 Sobic010G269400 Sobic010G269400 Sobic002G200700--Sobic010G269400 Sobic002G136100 Sobic002G136100 Sobic002G200700--Sobic002G136100 Sobic006G130000 Sobic006G130000 Sobic002G200700--Sobic006G130000 Sobic006G258700 Sobic006G258700 Sobic002G200700--Sobic006G258700 Sobic006G097200 Sobic006G097200 Sobic002G226400--Sobic006G097200 Sobic002G226400--Sobic004G133400 Sobic002G204200 Sobic002G204200 Sobic002G226400--Sobic002G204200 Sobic002G226400--Sobic008G089900 Sobic001G020100 Sobic001G020100 Sobic002G226400--Sobic001G020100 Sobic010G023700 Sobic010G023700 Sobic002G226400--Sobic010G023700 Sobic004G275000 Sobic004G275000 Sobic002G226400--Sobic004G275000 Sobic010G135600 Sobic010G135600 Sobic002G226400--Sobic010G135600 Sobic005G172400 Sobic005G172400 Sobic002G226400--Sobic005G172400 Sobic003G410100--Sobic004G133400 Sobic007G062200 Sobic007G062200 Sobic003G410100--Sobic007G062200 Sobic010G019300 Sobic010G019300 Sobic003G410100--Sobic010G019300 Sobic003G410100--Sobic002G001000 Sobic003G410100--Sobic003G224100 Sobic004G103000 Sobic004G103000 Sobic003G410100--Sobic004G103000 Sobic001G498000 Sobic001G498000 Sobic003G410100--Sobic001G498000 Sobic003G339700 Sobic003G339700 Sobic003G410100--Sobic003G339700 Sobic003G410100--Sobic008G089900 Sobic004G058200 Sobic004G058200 Sobic009G135900--Sobic004G058200 Sobic004G255700 Sobic004G255700 Sobic009G135900--Sobic004G255700 Sobic005G033200 Sobic005G033200 Sobic009G135900--Sobic005G033200 Sobic003G350800 Sobic003G350800 Sobic009G135900--Sobic003G350800 Sobic009G217900 Sobic009G217900 Sobic009G135900--Sobic009G217900 Sobic009G219900 Sobic009G219900 Sobic009G135900--Sobic009G219900 Sobic004G247000 Sobic004G247000 Sobic009G135900--Sobic004G247000 Sobic003G369500 Sobic003G369500 Sobic009G135900--Sobic003G369500 Sobic001G328200 Sobic001G328200 Sobic009G135900--Sobic001G328200 Sobic006G083800 Sobic006G083800 Sobic008G089900--Sobic006G083800 Sobic009G162600 Sobic009G162600 Sobic008G089900--Sobic009G162600 Sobic008G089900--Sobic004G103000 Sobic008G089900--Sobic002G204200 Sobic008G089900--Sobic002G001000 Sobic001G414500 Sobic001G414500 Sobic008G089900--Sobic001G414500 Sobic001G243200 Sobic001G243200 Sobic008G089900--Sobic001G243200 Sobic009G187400 Sobic009G187400 Sobic008G089900--Sobic009G187400 Sobic008G089900--Sobic009G207300 Sobic009G207300--Sobic008G089900 Sobic009G207300--Sobic002G128900 Sobic005G062700 Sobic005G062700 Sobic009G207300--Sobic005G062700 Sobic007G079400 Sobic007G079400 Sobic009G207300--Sobic007G079400 Sobic009G207300--Sobic009G162600 Sobic008G187100 Sobic008G187100 Sobic009G207300--Sobic008G187100 Sobic001G303200 Sobic001G303200 Sobic009G207300--Sobic001G303200 Sobic003G373600 Sobic003G373600 Sobic009G207300--Sobic003G373600 Sobic004G070700 Sobic004G070700 Sobic009G207300--Sobic004G070700 Sobic006G006700 Sobic006G006700 Sobic005G016500--Sobic006G006700 Sobic001G344600 Sobic001G344600 Sobic005G016500--Sobic001G344600 Sobic003G231800 Sobic003G231800 Sobic005G016500--Sobic003G231800 Sobic001G098600 Sobic001G098600 Sobic005G016500--Sobic001G098600 Sobic009G244300 Sobic009G244300 Sobic005G016500--Sobic009G244300 Sobic010G183100 Sobic010G183100 Sobic005G016500--Sobic010G183100 Sobic010G038500 Sobic010G038500 Sobic005G016500--Sobic010G038500 Sobic007G034300 Sobic007G034300 Sobic005G016500--Sobic007G034300 Sobic002G421300 Sobic002G421300 Sobic005G016500--Sobic002G421300 Sobic001G436400 Sobic001G436400 Sobic009G241100--Sobic001G436400 Sobic001G104600 Sobic001G104600 Sobic009G241100--Sobic001G104600 Sobic003G103300 Sobic003G103300 Sobic009G241100--Sobic003G103300 Sobic001G411100 Sobic001G411100 Sobic009G241100--Sobic001G411100 Sobic007G124500 Sobic007G124500 Sobic009G241100--Sobic007G124500 Sobic009G241100--Sobic005G062700 Sobic001G509200 Sobic001G509200 Sobic009G241100--Sobic001G509200 Sobic001G500700 Sobic001G500700 Sobic009G241100--Sobic001G500700 Sobic005G005400 Sobic005G005400 Sobic009G241100--Sobic005G005400 Sobic010G140600 Sobic010G140600 Sobic002G128900--Sobic010G140600 Sobic002G279700 Sobic002G279700 Sobic002G128900--Sobic002G279700 Sobic001G295300 Sobic001G295300 Sobic002G128900--Sobic001G295300 Sobic002G200900 Sobic002G200900 Sobic002G128900--Sobic002G200900 Sobic004G281900 Sobic004G281900 Sobic002G128900--Sobic004G281900 Sobic002G072400 Sobic002G072400 Sobic002G128900--Sobic002G072400 Sobic008G096800 Sobic008G096800 Sobic002G128900--Sobic008G096800 Sobic002G128900--Sobic010G269400 Sobic008G144800 Sobic008G144800 Sobic002G128900--Sobic008G144800
Octagon: transcription factors


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