Gene annotation
Transcriptome id Sobic.009G207300.1
Synonym Sb09g026390
Functional annotation ubiquitin domain-containing protein 1, putative, expressed
UniProt A0A1B6P9H0
Pfam PF16455
Panther DB PTHR13609
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53400 : Ubiquitin domain-containing protein
RAP-DB (Rice) LOC_Os09g17620.1 : ubiquitin domain-containing protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a044272
Brachypodium KQK05258
Barley HORVU1Hr1G081490.3 , HORVU1Hr1G081490.1 , HORVU1Hr1G081490.6 , HORVU1Hr1G081490.5 , HORVU1Hr1G081490.4
Wheat TraesCS1D02G352200 , TraesCS1B02G363900 , TraesCS1B02G363900
Populus -


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cDNA sequences
Sobic.009G207300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
2 Sobic.002G128900 thioesterase family protein, putative, expressed -
3 Sobic.005G062700 nifU, putative, expressed -
4 Sobic.007G079400 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
5 Sobic.009G162600 OsFtsH8 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
6 Sobic.008G187100 early-responsive to dehydration protein-related, putative, expressed -
7 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -
8 Sobic.003G373600 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
9 Sobic.004G070700 GA16396-PA, putative, expressed -
10 Sobic.002G349100 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
11 Sobic.003G264800 expressed protein -
12 Sobic.010G074300 smr domain containing protein, expressed -
13 Sobic.001G406100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15100: SLC25A1, solute carrier family 25 (mitochondrial citrate transporter), member 1
14 Sobic.009G241100 expressed protein -
15 Sobic.002G393700 expressed protein -
16 Sobic.003G186900 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
17 Sobic.002G279700 3-dehydroquinate synthase, putative, expressed K01735: 3-dehydroquinate synthase
18 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
19 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
20 Sobic.004G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -


Gene co-expression network
sample Sobic009G207300 Sobic009G207300 Sobic008G089900 Sobic008G089900 Sobic009G207300--Sobic008G089900 Sobic002G128900 Sobic002G128900 Sobic009G207300--Sobic002G128900 Sobic005G062700 Sobic005G062700 Sobic009G207300--Sobic005G062700 Sobic007G079400 Sobic007G079400 Sobic009G207300--Sobic007G079400 Sobic009G162600 Sobic009G162600 Sobic009G207300--Sobic009G162600 Sobic008G187100 Sobic008G187100 Sobic009G207300--Sobic008G187100 Sobic001G303200 Sobic001G303200 Sobic009G207300--Sobic001G303200 Sobic003G373600 Sobic003G373600 Sobic009G207300--Sobic003G373600 Sobic004G070700 Sobic004G070700 Sobic009G207300--Sobic004G070700 Sobic006G083800 Sobic006G083800 Sobic008G089900--Sobic006G083800 Sobic008G089900--Sobic009G162600 Sobic004G103000 Sobic004G103000 Sobic008G089900--Sobic004G103000 Sobic002G204200 Sobic002G204200 Sobic008G089900--Sobic002G204200 Sobic002G001000 Sobic002G001000 Sobic008G089900--Sobic002G001000 Sobic001G414500 Sobic001G414500 Sobic008G089900--Sobic001G414500 Sobic001G243200 Sobic001G243200 Sobic008G089900--Sobic001G243200 Sobic009G187400 Sobic009G187400 Sobic008G089900--Sobic009G187400 Sobic008G089900--Sobic009G207300 Sobic010G140600 Sobic010G140600 Sobic002G128900--Sobic010G140600 Sobic002G279700 Sobic002G279700 Sobic002G128900--Sobic002G279700 Sobic001G295300 Sobic001G295300 Sobic002G128900--Sobic001G295300 Sobic002G200900 Sobic002G200900 Sobic002G128900--Sobic002G200900 Sobic004G281900 Sobic004G281900 Sobic002G128900--Sobic004G281900 Sobic002G072400 Sobic002G072400 Sobic002G128900--Sobic002G072400 Sobic008G096800 Sobic008G096800 Sobic002G128900--Sobic008G096800 Sobic010G269400 Sobic010G269400 Sobic002G128900--Sobic010G269400 Sobic008G144800 Sobic008G144800 Sobic002G128900--Sobic008G144800 Sobic009G225600 Sobic009G225600 Sobic005G062700--Sobic009G225600 Sobic001G015200 Sobic001G015200 Sobic005G062700--Sobic001G015200 Sobic002G047400 Sobic002G047400 Sobic005G062700--Sobic002G047400 Sobic005G062700--Sobic001G303200 Sobic006G221000 Sobic006G221000 Sobic005G062700--Sobic006G221000 Sobic001G509200 Sobic001G509200 Sobic005G062700--Sobic001G509200 Sobic005G172400 Sobic005G172400 Sobic005G062700--Sobic005G172400 Sobic007G108900 Sobic007G108900 Sobic005G062700--Sobic007G108900 Sobic004G305900 Sobic004G305900 Sobic005G062700--Sobic004G305900 Sobic007G108400 Sobic007G108400 Sobic007G079400--Sobic007G108400 Sobic003G105900 Sobic003G105900 Sobic007G079400--Sobic003G105900 Sobic001G057700 Sobic001G057700 Sobic007G079400--Sobic001G057700 Sobic003G264800 Sobic003G264800 Sobic007G079400--Sobic003G264800 Sobic002G401000 Sobic002G401000 Sobic007G079400--Sobic002G401000 Sobic007G079400--Sobic003G373600 Sobic002G393700 Sobic002G393700 Sobic007G079400--Sobic002G393700 Sobic007G079400--Sobic005G062700 Sobic004G344000 Sobic004G344000 Sobic007G079400--Sobic004G344000 Sobic003G340600 Sobic003G340600 Sobic009G162600--Sobic003G340600 Sobic002G349100 Sobic002G349100 Sobic009G162600--Sobic002G349100 Sobic009G103000 Sobic009G103000 Sobic009G162600--Sobic009G103000 Sobic009G162600--Sobic002G072400 Sobic002G275100 Sobic002G275100 Sobic009G162600--Sobic002G275100 Sobic009G162600--Sobic003G105900 Sobic009G162600--Sobic008G089900 Sobic004G300100 Sobic004G300100 Sobic009G162600--Sobic004G300100 Sobic003G029500 Sobic003G029500 Sobic009G162600--Sobic003G029500 Sobic003G381700 Sobic003G381700 Sobic008G187100--Sobic003G381700 Sobic003G186900 Sobic003G186900 Sobic008G187100--Sobic003G186900 Sobic003G339700 Sobic003G339700 Sobic008G187100--Sobic003G339700 Sobic005G106600 Sobic005G106600 Sobic008G187100--Sobic005G106600 Sobic008G187100--Sobic001G057700 Sobic001G352400 Sobic001G352400 Sobic008G187100--Sobic001G352400 Sobic003G166200 Sobic003G166200 Sobic008G187100--Sobic003G166200 Sobic004G322700 Sobic004G322700 Sobic008G187100--Sobic004G322700 Sobic007G146400 Sobic007G146400 Sobic008G187100--Sobic007G146400 Sobic001G283100 Sobic001G283100 Sobic001G303200--Sobic001G283100 Sobic002G382700 Sobic002G382700 Sobic001G303200--Sobic002G382700 Sobic001G333800 Sobic001G333800 Sobic001G303200--Sobic001G333800 Sobic001G207800 Sobic001G207800 Sobic001G303200--Sobic001G207800 Sobic006G102000 Sobic006G102000 Sobic001G303200--Sobic006G102000 Sobic001G303200--Sobic007G108900 Sobic001G303200--Sobic006G221000 Sobic006G090100 Sobic006G090100 Sobic001G303200--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic001G303200--Sobic003G094100 Sobic003G157900 Sobic003G157900 Sobic003G373600--Sobic003G157900 Sobic003G373600--Sobic005G062700 Sobic003G425300 Sobic003G425300 Sobic003G373600--Sobic003G425300 Sobic003G373600--Sobic003G381700 Sobic003G373600--Sobic005G172400 Sobic001G276300 Sobic001G276300 Sobic003G373600--Sobic001G276300 Sobic003G373600--Sobic007G079400 Sobic008G077500 Sobic008G077500 Sobic003G373600--Sobic008G077500 Sobic003G373600--Sobic008G187100 Sobic003G354600 Sobic003G354600 Sobic004G070700--Sobic003G354600 Sobic001G193300 Sobic001G193300 Sobic004G070700--Sobic001G193300 Sobic007G171400 Sobic007G171400 Sobic004G070700--Sobic007G171400 Sobic008G168300 Sobic008G168300 Sobic004G070700--Sobic008G168300 Sobic006G185100 Sobic006G185100 Sobic004G070700--Sobic006G185100 Sobic002G111200 Sobic002G111200 Sobic004G070700--Sobic002G111200 Sobic002G325300 Sobic002G325300 Sobic004G070700--Sobic002G325300 Sobic002G091600 Sobic002G091600 Sobic004G070700--Sobic002G091600 Sobic003G176000 Sobic003G176000 Sobic004G070700--Sobic003G176000
Octagon: transcription factors


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