Gene annotation
| Transcriptome id | Sobic.006G220800.1 |
|---|---|
| Synonym | Sb06g029020, GDCT |
| Functional annotation | - (PubMedID : 26976818) aminomethyltransferase, putative, expressed |
| UniProt | C5YG66 |
| Pfam | PF08669 PF01571 |
| Panther DB | PTHR13847 PTHR13847:SF212 |
| NCBI CDD | - |
| KEGG Orthology | K00605; gcvT, aminomethyltransferase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G11860 : Glycine cleavage T-protein family |
|---|---|
| RAP-DB (Rice) | LOC_Os04g53230.1 : aminomethyltransferase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a009715 |
| Brachypodium | KQJ84692 |
| Barley | HORVU2Hr1G103130.2 , HORVU2Hr1G103130.3 , HORVU2Hr1G103130.1 |
| Wheat | TraesCS2D02G467900 , TraesCS2A02G467900 , TraesCS2B02G490900 |
| Populus | - |
JBrowse
| Sobic.006G220800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G120700 | decarboxylase, putative, expressed | K01592: tyrosine decarboxylase |
| 2 | Sobic.010G023700 | Transketolase(PubMedID : 26186930)@transketolase, chloroplast precursor, putative, expressed | K00615: E2.2.1.1, tktA, transketolase |
| 3 | Sobic.002G051100 | Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
| 4 | Sobic.001G344600 | late embryogenesis abundant protein, putative, expressed | - |
| 5 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 6 | Sobic.010G241300 | -(PubMedID : 26465154)@OsCML29 - Calmodulin-related calcium sensor protein, expressed | - |
| 7 | Sobic.002G030500 | Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed | - |
| 8 | Sobic.007G213300 | glycerophosphoryl diester phosphodiesterase family protein, putative, expressed | - |
| 9 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 10 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 11 | Sobic.008G053200 | fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
| 12 | Sobic.006G008700 | bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed | K13811: 3'-phosphoadenosine 5'-phosphosulfate synthase |
| 13 | Sobic.010G095000 | kinase, pfkB family, putative, expressed | K00847: E2.7.1.4, fructokinase |
| 14 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 15 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 16 | Sobic.004G125700 | isochorismatase family protein, putative, expressed | - |
| 17 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 18 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 19 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 20 | Sobic.008G134800 | shikimate kinase, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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