Gene annotation
Transcriptome id Sobic.007G213300.1,Sobic.007G213300.2
Synonym SVL1, Sb07g028050
Functional annotation glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
UniProt A0A1Z5RC44 , A0A1Z5RBY4
Pfam PF03009
Panther DB PTHR23344 PTHR23344:SF24
NCBI CDD KOG2258; Glycerophosphoryl diester phosphodiesterase
KEGG Orthology -
Gene Ontology GO:0008081; phosphoric diester hydrolase activity GO:0006629lipid metabolic process GO:0008889glycerophosphodiester phosphodiesterase activity


Orthologs (automatic annotation)
TAIR AT5G55480 : SHV3-like 1
RAP-DB (Rice) LOC_Os08g39350.1 : glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a005043 , Zm00025a048767 , Zm00025a033785
Brachypodium KQJ98891
Barley -
Wheat TraesCS7B02G147500 , TraesCS7D02G242500 , TraesCS7D02G242500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G241300 -(PubMedID : 26465154)@OsCML29 - Calmodulin-related calcium sensor protein, expressed -
2 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
3 Sobic.009G190500 calreticulin precursor protein, putative, expressed K08057: calreticulin
4 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
5 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
6 Sobic.007G223500 expressed protein -
7 Sobic.001G078400 OsSigP2 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K03100: signal peptidase I
8 Sobic.006G220800 -(PubMedID : 26976818)@aminomethyltransferase, putative, expressed K00605: gcvT, aminomethyltransferase
9 Sobic.001G338700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
10 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
11 Sobic.003G209900 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Chlorophyll a/b-binding protein(PubMedID : 26317421)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
12 Sobic.002G120700 decarboxylase, putative, expressed K01592: tyrosine decarboxylase
13 Sobic.001G344600 late embryogenesis abundant protein, putative, expressed -
14 Sobic.010G245200 expressed protein -
15 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
16 Sobic.009G164300 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
17 Sobic.003G359100 sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed K01100: sedoheptulose-bisphosphatase
18 Sobic.008G134800 shikimate kinase, putative, expressed -
19 Sobic.004G122200 expressed protein -
20 Sobic.002G211000 DUF581 domain containing protein, expressed -


Gene co-expression network
sample Sobic007G213300 Sobic007G213300 Sobic010G241300 Sobic010G241300 Sobic007G213300--Sobic010G241300 Sobic002G316700 Sobic002G316700 Sobic007G213300--Sobic002G316700 Sobic009G190500 Sobic009G190500 Sobic007G213300--Sobic009G190500 Sobic009G143100 Sobic009G143100 Sobic007G213300--Sobic009G143100 Sobic002G030500 Sobic002G030500 Sobic007G213300--Sobic002G030500 Sobic007G223500 Sobic007G223500 Sobic007G213300--Sobic007G223500 Sobic001G078400 Sobic001G078400 Sobic007G213300--Sobic001G078400 Sobic006G220800 Sobic006G220800 Sobic007G213300--Sobic006G220800 Sobic001G338700 Sobic001G338700 Sobic007G213300--Sobic001G338700 Sobic008G183200 Sobic008G183200 Sobic010G241300--Sobic008G183200 Sobic007G059500 Sobic007G059500 Sobic010G241300--Sobic007G059500 Sobic005G127000 Sobic005G127000 Sobic010G241300--Sobic005G127000 Sobic004G122200 Sobic004G122200 Sobic010G241300--Sobic004G122200 Sobic003G397200 Sobic003G397200 Sobic010G241300--Sobic003G397200 Sobic006G010800 Sobic006G010800 Sobic010G241300--Sobic006G010800 Sobic009G034600 Sobic009G034600 Sobic010G241300--Sobic009G034600 Sobic005G111500 Sobic005G111500 Sobic010G241300--Sobic005G111500 Sobic010G241300--Sobic007G213300 Sobic002G316700--Sobic007G223500 Sobic002G316700--Sobic009G143100 Sobic007G071500 Sobic007G071500 Sobic002G316700--Sobic007G071500 Sobic003G209900 Sobic003G209900 Sobic002G316700--Sobic003G209900 Sobic007G207800 Sobic007G207800 Sobic002G316700--Sobic007G207800 Sobic008G063500 Sobic008G063500 Sobic002G316700--Sobic008G063500 Sobic008G134800 Sobic008G134800 Sobic002G316700--Sobic008G134800 Sobic001G177000 Sobic001G177000 Sobic002G316700--Sobic001G177000 Sobic004G056900 Sobic004G056900 Sobic002G316700--Sobic004G056900 Sobic009G190500--Sobic007G213300 Sobic009G190500--Sobic006G010800 Sobic002G301700 Sobic002G301700 Sobic009G190500--Sobic002G301700 Sobic009G190500--Sobic010G241300 Sobic001G006400 Sobic001G006400 Sobic009G190500--Sobic001G006400 Sobic009G190500--Sobic007G059500 Sobic001G240800 Sobic001G240800 Sobic009G190500--Sobic001G240800 Sobic009G190500--Sobic006G220800 Sobic006G201700 Sobic006G201700 Sobic009G190500--Sobic006G201700 Sobic009G143100--Sobic007G071500 Sobic009G143100--Sobic002G316700 Sobic009G143100--Sobic007G223500 Sobic009G143100--Sobic008G134800 Sobic003G387800 Sobic003G387800 Sobic009G143100--Sobic003G387800 Sobic009G140600 Sobic009G140600 Sobic009G143100--Sobic009G140600 Sobic001G417200 Sobic001G417200 Sobic009G143100--Sobic001G417200 Sobic006G105900 Sobic006G105900 Sobic009G143100--Sobic006G105900 Sobic004G249800 Sobic004G249800 Sobic009G143100--Sobic004G249800 Sobic002G030500--Sobic007G207800 Sobic008G066100 Sobic008G066100 Sobic002G030500--Sobic008G066100 Sobic002G030500--Sobic007G223500 Sobic002G030500--Sobic002G316700 Sobic002G030500--Sobic007G071500 Sobic003G359100 Sobic003G359100 Sobic002G030500--Sobic003G359100 Sobic002G030500--Sobic008G134800 Sobic006G093900 Sobic006G093900 Sobic002G030500--Sobic006G093900 Sobic003G435800 Sobic003G435800 Sobic002G030500--Sobic003G435800 Sobic007G223500--Sobic002G316700 Sobic007G223500--Sobic007G207800 Sobic004G227200 Sobic004G227200 Sobic007G223500--Sobic004G227200 Sobic007G223500--Sobic008G134800 Sobic007G223500--Sobic009G143100 Sobic001G425400 Sobic001G425400 Sobic007G223500--Sobic001G425400 Sobic007G223500--Sobic007G071500 Sobic007G223500--Sobic003G387800 Sobic007G223500--Sobic008G066100 Sobic001G078400--Sobic002G030500 Sobic004G026700 Sobic004G026700 Sobic001G078400--Sobic004G026700 Sobic004G033700 Sobic004G033700 Sobic001G078400--Sobic004G033700 Sobic001G078400--Sobic008G066100 Sobic007G029700 Sobic007G029700 Sobic001G078400--Sobic007G029700 Sobic002G000700 Sobic002G000700 Sobic001G078400--Sobic002G000700 Sobic006G147300 Sobic006G147300 Sobic001G078400--Sobic006G147300 Sobic001G078400--Sobic001G338700 Sobic008G015100 Sobic008G015100 Sobic001G078400--Sobic008G015100 Sobic002G120700 Sobic002G120700 Sobic006G220800--Sobic002G120700 Sobic010G023700 Sobic010G023700 Sobic006G220800--Sobic010G023700 Sobic002G051100 Sobic002G051100 Sobic006G220800--Sobic002G051100 Sobic001G344600 Sobic001G344600 Sobic006G220800--Sobic001G344600 Sobic004G035500 Sobic004G035500 Sobic006G220800--Sobic004G035500 Sobic006G220800--Sobic010G241300 Sobic006G220800--Sobic002G030500 Sobic006G220800--Sobic007G213300 Sobic006G220800--Sobic008G066100 Sobic003G052500 Sobic003G052500 Sobic001G338700--Sobic003G052500 Sobic006G011100 Sobic006G011100 Sobic001G338700--Sobic006G011100 Sobic010G109500 Sobic010G109500 Sobic001G338700--Sobic010G109500 Sobic006G234100 Sobic006G234100 Sobic001G338700--Sobic006G234100 Sobic001G338700--Sobic004G056900 Sobic001G338700--Sobic007G071500 Sobic001G070500 Sobic001G070500 Sobic001G338700--Sobic001G070500 Sobic003G209800 Sobic003G209800 Sobic001G338700--Sobic003G209800 Sobic001G338700--Sobic004G035500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.