Gene annotation
| Transcriptome id | Sobic.001G078400.1 |
|---|---|
| Synonym | Sb01g007080, TPP |
| Functional annotation | OsSigP2 - Putative Type I Signal Peptidase homologue employs a putative Ser/Lys catalytic dyad, expressed |
| UniProt | C5WZA4 |
| Pfam | PF10502 |
| Panther DB | PTHR12383 PTHR12383:SF26 |
| NCBI CDD | KOG0171; Mitochondrial inner membrane protease, subunit IMP1 |
| KEGG Orthology | K03100; signal peptidase I |
| Gene Ontology | GO:0016020; membrane GO:0008236serine-type peptidase activity GO:0006508proteolysis |
Orthologs (automatic annotation)
| TAIR | AT1G06870 : Peptidase S24/S26A/S26B/S26C family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g55640.1 : OsSigP2 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed |
| MaizeGDB (Corn) | Zm00025a008299 , Zm00025a016724 , Zm00025a047230 |
| Brachypodium | KQK13031 , KQK13032 |
| Barley | HORVU5Hr1G097710.7 , HORVU5Hr1G097710.6 , HORVU5Hr1G097710.5 , HORVU5Hr1G097710.4 , HORVU5Hr1G097710.3 , HORVU5Hr1G097710.9 , HORVU5Hr1G097710.8 , HORVU5Hr1G067800.1 , HORVU5Hr1G097710.2 , HORVU5Hr1G097710.1 , HORVU5Hr1G067800.4 , HORVU5Hr1G067800.2 , HORVU5Hr1G067800.3 |
| Wheat | TraesCS5B02G406800 , TraesCS5D02G412300 , TraesCS5D02G412300 , TraesCS5D02G412300 , TraesCS5A02G402100 , TraesCS5A02G402100 , TraesCS5D02G412300 , TraesCS5B02G406800 , TraesCS5B02G406800 , TraesCS5B02G406800 , TraesCS5B02G406800 |
| Populus | - |
JBrowse
| Sobic.001G078400 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G030500 | Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed | - |
| 2 | Sobic.004G026700 | down-regulated TF in developmental senescence(PubMedID : 27586543)@transcription factor, putative, expressed | K09060: plant G-box-binding factor |
| 3 | Sobic.004G033700 | expressed protein | - |
| 4 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 5 | Sobic.007G029700 | BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed | - |
| 6 | Sobic.002G000700 | expressed protein | - |
| 7 | Sobic.006G147300 | -(PubMedID : 26465154)@expressed protein | - |
| 8 | Sobic.001G338700 | tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | - |
| 9 | Sobic.008G015100 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed | K14487: auxin responsive GH3 gene family |
| 10 | Sobic.001G391900 | nifU, putative, expressed | - |
| 11 | Sobic.002G120700 | decarboxylase, putative, expressed | K01592: tyrosine decarboxylase |
| 12 | Sobic.008G101400 | - | - |
| 13 | Sobic.007G046500 | 60S ribosomal protein L18a-1, putative, expressed | - |
| 14 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 15 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
| 16 | Sobic.007G213300 | glycerophosphoryl diester phosphodiesterase family protein, putative, expressed | - |
| 17 | Sobic.008G072700 | expressed protein | - |
| 18 | Sobic.004G201700 | glycosyl transferase family 17 protein, putative, expressed | K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase |
| 19 | Sobic.001G425400 | high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 20 | Sobic.004G122200 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
