Gene annotation
| Transcriptome id | Sobic.002G120700.1 |
|---|---|
| Synonym | Sb02g010470 |
| Functional annotation | decarboxylase, putative, expressed |
| UniProt | A0A1B6QAS1 |
| Pfam | PF00282 |
| Panther DB | PTHR11999 PTHR11999:SF70 |
| NCBI CDD | - |
| KEGG Orthology | K01592; tyrosine decarboxylase |
| Gene Ontology | GO:0016831; carboxy-lyase activity |
Orthologs (automatic annotation)
| TAIR | AT2G20340 : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g25590.1 : decarboxylase, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | KQK16479 , KQK16478 , KQK16480 , KQK16481 |
| Barley | - |
| Wheat | TraesCS5A02G131000 , TraesCS5D02G138500 , TraesCS5B02G130900 , TraesCS3B02G440400 , TraesCS3A02G410800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 2 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 3 | Sobic.008G134800 | shikimate kinase, putative, expressed | - |
| 4 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 5 | Sobic.002G051100 | Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
| 6 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 7 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 8 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 9 | Sobic.008G102000 | Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed | - |
| 10 | Sobic.009G140600 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 11 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 12 | Sobic.004G249800 | expressed protein | - |
| 13 | Sobic.006G105900 | Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 14 | Sobic.009G143100 | cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed | K02636: cytochrome b6-f complex iron-sulfur subunit |
| 15 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
| 16 | Sobic.005G123200 | cbbY, putative, expressed | - |
| 17 | Sobic.003G002300 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed | K15283: solute carrier family 35, member E1 |
| 18 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 19 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 20 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
Gene co-expression network
Octagon: transcription factors
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