Gene annotation
| Transcriptome id | Sobic.005G123200.4,Sobic.005G123200.2,Sobic.005G123200.3 |
|---|---|
| Synonym | Sb05g018080 |
| Functional annotation | cbbY, putative, expressed |
| UniProt | C5Y2P7 , A0A1Z5RII1 , A0A1Z5RJE4 |
| Pfam | PF13419 PF00098 PF13419 |
| Panther DB | PTHR18901 PTHR18901:SF9 |
| NCBI CDD | KOG2914; Predicted haloacid-halidohydrolase and related hydrolases |
| KEGG Orthology | - |
| Gene Ontology | GO:0008270; zinc ion binding GO:0003676nucleic acid binding |
Orthologs (automatic annotation)
| TAIR | AT3G48420 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g36750.1 : cbbY, putative, expressed |
| MaizeGDB (Corn) | Zm00025a015666 |
| Brachypodium | KQK18339 , PNT75926 |
| Barley | HORVU7Hr1G082590.5 , HORVU7Hr1G082590.4 , HORVU7Hr1G082590.7 , HORVU7Hr1G082590.6 , HORVU7Hr1G082590.1 , HORVU7Hr1G082590.3 , HORVU7Hr1G082590.2 , HORVU7Hr1G082590.9 , HORVU7Hr1G082590.8 |
| Wheat | TraesCS7B02G247200 , TraesCS7D02G343300 , TraesCS7A02G335600 |
| Populus | - |
JBrowse
| Sobic.005G123200 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G527000 | PsbP-like protein 1 (At)(PubMedID : 27208977)@Photosystem I subunit P-like protein(PubMedID : 29017446)@PsbP, putative, expressed | K02717: photosystem II oxygen-evolving enhancer protein 2 |
| 2 | Sobic.004G239100 | -(PubMedID : 26465154)@expressed protein | - |
| 3 | Sobic.009G030900 | bundle sheath defective protein 2, putative, expressed | - |
| 4 | Sobic.009G183700 | XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed | K00927: PGK, phosphoglycerate kinase |
| 5 | Sobic.010G277600 | - | - |
| 6 | Sobic.005G194100 | expressed protein | - |
| 7 | Sobic.009G043000 | thioredoxin, putative, expressed | - |
| 8 | Sobic.008G102000 | Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed | - |
| 9 | Sobic.002G152700 | rhodanese-like, putative, expressed | - |
| 10 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 11 | Sobic.003G303700 | Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein | - |
| 12 | Sobic.003G002300 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed | K15283: solute carrier family 35, member E1 |
| 13 | Sobic.002G277100 | -(PubMedID : 29017446)@triosephosphate isomerase, chloroplast precursor, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 14 | Sobic.002G120700 | decarboxylase, putative, expressed | K01592: tyrosine decarboxylase |
| 15 | Sobic.005G116100 | expressed protein | - |
| 16 | Sobic.010G005500 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 17 | Sobic.009G091850 | - | - |
| 18 | Sobic.004G249800 | expressed protein | - |
| 19 | Sobic.001G350000 | expressed protein | - |
| 20 | Sobic.009G140600 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
