Gene annotation
Transcriptome id Sobic.003G209900.1
Synonym LHCB1;4;LHCB1;4, LHCB1.5, Sb03g027040, LHB1B2
Functional annotation Chorophyll a/b binding protein 2 (PubMedID : 26186930)
Chlorophyll a/b-binding protein (PubMedID : 26317421)
Protein chlorophyll a-b binding protein 2 (Os) (PubMedID : 27208977)
chlorophyll A-B binding protein, putative, expressed
UniProt C5XQ83
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF20
NCBI CDD -
KEGG Orthology K08912; light-harvesting complex II chlorophyll a/b binding protein 1
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT2G34420 : photosystem II light harvesting complex gene B1B2
RAP-DB (Rice) LOC_Os01g41710.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a048387 , Zm00025a007156 , Zm00025a047961 , Zm00025a038213 , Zm00025a014904 , Zm00025a038456 , Zm00025a036624 , Zm00025a054950 , Zm00025a028623 , Zm00025a007161 , Zm00025a044593 , Zm00025a028626 , Zm00025a028624 , Zm00025a034789 , Zm00025a019095
Brachypodium KQK14298 , KQK13732 , KQJ91372 , KQJ86724 , KQJ90397 , KQK04837 , PNT68562 , PNT68561 , PNT68560 , KQK04838
Barley HORVU7Hr1G040380.8 , HORVU7Hr1G040380.9 , HORVU7Hr1G040380.6 , HORVU7Hr1G040380.7 , HORVU7Hr1G040380.4 , HORVU7Hr1G040380.5 , HORVU7Hr1G040380.2 , HORVU7Hr1G040380.3 , HORVU7Hr1G040380.1 , HORVU5Hr1G109260.4 , HORVU5Hr1G109260.3 , HORVU5Hr1G109260.2 , HORVU5Hr1G109260.1 , HORVU1Hr1G088880.2 , HORVU1Hr1G088880.1 , HORVU5Hr1G124160.1 , HORVU5Hr1G087250.1 , HORVU1Hr1G088930.2 , HORVU1Hr1G088930.1 , HORVU1Hr1G088870.2 , HORVU6Hr1G091660.1 , HORVU1Hr1G088870.1 , HORVU7Hr1G040370.2 , HORVU7Hr1G040370.1 , HORVU5Hr1G082420.2 , HORVU5Hr1G082420.1 , HORVU5Hr1G109360.2 , HORVU5Hr1G109360.1 , HORVU5Hr1G087250.2 , HORVU6Hr1G091650.1 , HORVU2Hr1G040780.8 , HORVU2Hr1G040780.7 , HORVU2Hr1G040780.6 , HORVU2Hr1G040780.5 , HORVU2Hr1G040780.4 , HORVU2Hr1G040780.3 , HORVU2Hr1G040780.2 , HORVU2Hr1G040780.1 , HORVU7Hr1G040380.10 , HORVU7Hr1G040380.11 , HORVU1Hr1G088920.1 , HORVU1Hr1G088920.2 , HORVU1Hr1G088920.3 , HORVU6Hr1G016890.1 , HORVU6Hr1G016890.2 , HORVU6Hr1G016890.3 , HORVU6Hr1G016890.4 , HORVU6Hr1G016890.5 , HORVU6Hr1G016890.6 , HORVU5Hr1G062240.1 , HORVU5Hr1G062240.3 , HORVU5Hr1G062240.2 , HORVU5Hr1G062240.5 , HORVU5Hr1G062240.4 , HORVU7Hr1G058120.2 , HORVU7Hr1G058120.1
Wheat TraesCS5D02G329200 , TraesCS5A02G213000 , TraesCS5A02G322500 , TraesCS2A02G204800 , TraesCS6B02G191500 , TraesCS5B02G462900 , TraesCS2B02G220100 , TraesCS2A02G187200 , TraesCS5B02G322900 , TraesCS1D02G428200 , TraesCS5B02G353200 , TraesCS1D02G375000 , TraesCS5B02G210800 , TraesCS5B02G210800 , TraesCS6D02G152700 , TraesCS6A02G159800 , TraesCS1B02G317500
Populus -


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cDNA sequences
Sobic.003G209900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
2 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
3 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
4 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
5 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
6 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
7 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
8 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
9 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
10 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
11 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
12 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
13 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
14 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
15 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
16 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
17 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
18 Sobic.007G223500 expressed protein -
19 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
20 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)


Gene co-expression network
sample Sobic003G209900 Sobic003G209900 Sobic008G063500 Sobic008G063500 Sobic003G209900--Sobic008G063500 Sobic004G056900 Sobic004G056900 Sobic003G209900--Sobic004G056900 Sobic007G136900 Sobic007G136900 Sobic003G209900--Sobic007G136900 Sobic001G177000 Sobic001G177000 Sobic003G209900--Sobic001G177000 Sobic002G316700 Sobic002G316700 Sobic003G209900--Sobic002G316700 Sobic002G242000 Sobic002G242000 Sobic003G209900--Sobic002G242000 Sobic001G070500 Sobic001G070500 Sobic003G209900--Sobic001G070500 Sobic001G046900 Sobic001G046900 Sobic003G209900--Sobic001G046900 Sobic003G052500 Sobic003G052500 Sobic003G209900--Sobic003G052500 Sobic008G063500--Sobic001G177000 Sobic002G030200 Sobic002G030200 Sobic008G063500--Sobic002G030200 Sobic008G063500--Sobic002G242000 Sobic008G063500--Sobic007G136900 Sobic008G063500--Sobic003G209900 Sobic008G063500--Sobic004G056900 Sobic008G063500--Sobic001G046900 Sobic008G063500--Sobic002G316700 Sobic002G338000 Sobic002G338000 Sobic008G063500--Sobic002G338000 Sobic004G056900--Sobic002G242000 Sobic004G056900--Sobic001G177000 Sobic004G056900--Sobic001G046900 Sobic004G056900--Sobic001G070500 Sobic002G033900 Sobic002G033900 Sobic004G056900--Sobic002G033900 Sobic004G056900--Sobic007G136900 Sobic006G073500 Sobic006G073500 Sobic004G056900--Sobic006G073500 Sobic010G241000 Sobic010G241000 Sobic004G056900--Sobic010G241000 Sobic004G056900--Sobic003G052500 Sobic002G352100 Sobic002G352100 Sobic007G136900--Sobic002G352100 Sobic007G136900--Sobic001G046900 Sobic007G136900--Sobic004G056900 Sobic010G189300 Sobic010G189300 Sobic007G136900--Sobic010G189300 Sobic007G136900--Sobic002G242000 Sobic007G136900--Sobic001G177000 Sobic007G136900--Sobic001G070500 Sobic007G136900--Sobic006G073500 Sobic009G229700 Sobic009G229700 Sobic007G136900--Sobic009G229700 Sobic001G177000--Sobic004G056900 Sobic001G177000--Sobic002G242000 Sobic001G177000--Sobic001G046900 Sobic001G177000--Sobic010G241000 Sobic001G177000--Sobic002G030200 Sobic001G177000--Sobic008G063500 Sobic009G234600 Sobic009G234600 Sobic001G177000--Sobic009G234600 Sobic001G177000--Sobic007G136900 Sobic001G177000--Sobic002G338000 Sobic007G223500 Sobic007G223500 Sobic002G316700--Sobic007G223500 Sobic009G143100 Sobic009G143100 Sobic002G316700--Sobic009G143100 Sobic007G071500 Sobic007G071500 Sobic002G316700--Sobic007G071500 Sobic002G316700--Sobic003G209900 Sobic007G207800 Sobic007G207800 Sobic002G316700--Sobic007G207800 Sobic002G316700--Sobic008G063500 Sobic008G134800 Sobic008G134800 Sobic002G316700--Sobic008G134800 Sobic002G316700--Sobic001G177000 Sobic002G316700--Sobic004G056900 Sobic002G242000--Sobic004G056900 Sobic002G242000--Sobic001G177000 Sobic002G242000--Sobic001G046900 Sobic002G242000--Sobic001G070500 Sobic002G242000--Sobic007G136900 Sobic002G242000--Sobic002G030200 Sobic002G242000--Sobic002G033900 Sobic002G242000--Sobic010G241000 Sobic002G242000--Sobic008G063500 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic001G070500--Sobic004G056900 Sobic001G070500--Sobic010G189300 Sobic001G070500--Sobic009G229700 Sobic001G070500--Sobic002G242000 Sobic001G070500--Sobic001G046900 Sobic001G070500--Sobic007G136900 Sobic001G070500--Sobic003G052500 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic001G046900--Sobic007G136900 Sobic005G087000 Sobic005G087000 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic004G235200 Sobic004G235200 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic003G052500--Sobic010G241000 Sobic003G052500--Sobic006G073500 Sobic003G052500--Sobic004G056900 Sobic003G052500--Sobic002G033900 Sobic006G105900 Sobic006G105900 Sobic003G052500--Sobic006G105900 Sobic003G052500--Sobic001G070500 Sobic003G209800 Sobic003G209800 Sobic003G052500--Sobic003G209800 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700
Octagon: transcription factors


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