Gene annotation
Transcriptome id Sobic.001G407600.1
Synonym Sb01g038500, multi-seeded 3, FAD8, Sorbi_3001G407600 , MSD3
Functional annotation plastid-targeted omega-3 fatty acid desaturase (PubMedID : 31661847)
omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
UniProt C5WNJ5
Pfam PF00487 PF11960
Panther DB PTHR32100 PTHR32100:SF17
NCBI CDD -
KEGG Orthology K10257; FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase
Gene Ontology GO:0006629; lipid metabolic process GO:0016717oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water


Orthologs (automatic annotation)
TAIR AT5G05580 : fatty acid desaturase 8
RAP-DB (Rice) LOC_Os03g18070.1 : omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a052679 , Zm00025a001974 , Zm00025a015517
Brachypodium KQK22170 , KQK14478
Barley HORVU4Hr1G056470.10 , HORVU4Hr1G056470.11 , HORVU4Hr1G056470.14 , HORVU4Hr1G056470.15 , HORVU4Hr1G024960.3 , HORVU4Hr1G024960.2 , HORVU4Hr1G024960.1 , HORVU3Hr1G026670.8 , HORVU3Hr1G026670.9 , HORVU3Hr1G026670.6 , HORVU3Hr1G026670.7 , HORVU3Hr1G026670.4 , HORVU3Hr1G026670.5 , HORVU3Hr1G026670.2 , HORVU3Hr1G026670.3 , HORVU3Hr1G026670.1 , HORVU5Hr1G048240.4 , HORVU5Hr1G048240.7 , HORVU5Hr1G048240.9 , HORVU5Hr1G048240.8 , HORVU3Hr1G026670.14 , HORVU3Hr1G026670.15 , HORVU3Hr1G026670.16 , HORVU3Hr1G026670.17 , HORVU3Hr1G026670.10 , HORVU3Hr1G026670.11 , HORVU3Hr1G026670.12 , HORVU3Hr1G026670.13 , HORVU3Hr1G026670.18 , HORVU3Hr1G026670.19 , HORVU4Hr1G056470.12 , HORVU4Hr1G056470.3 , HORVU4Hr1G056470.13 , HORVU3Hr1G026670.21 , HORVU3Hr1G026670.20 , HORVU3Hr1G026670.23 , HORVU3Hr1G026670.22 , HORVU4Hr1G056470.9 , HORVU5Hr1G048240.1 , HORVU4Hr1G056470.1 , HORVU4Hr1G056470.2 , HORVU4Hr1G056470.4 , HORVU4Hr1G056470.6 , HORVU4Hr1G056470.8 , HORVU5Hr1G048240.5
Wheat TraesCS4A02G109300 , TraesCS2D02G082700 , TraesCS5B02G153000 , TraesCS5A02G154800 , TraesCS4D02G195600 , TraesCS4D02G130700 , TraesCS4A02G182700 , TraesCS2B02G099500 , TraesCS4B02G135900 , TraesCS4B02G194900 , TraesCS5D02G159700 , TraesCS2A02G084800
Populus -


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cDNA sequences
Sobic.001G407600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G489000 NAD(P)-linked oxidoreductase superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@putativ eribonuclease P, putative, expressed -
2 Sobic.005G172400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PAP fibrillin family domain containing protein, expressed -
3 Sobic.001G202600 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
4 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
5 Sobic.002G279700 3-dehydroquinate synthase, putative, expressed K01735: 3-dehydroquinate synthase
6 Sobic.009G172600 Major facilitator superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@NFD4, putative, expressed -
7 Sobic.001G020100 expressed protein -
8 Sobic.004G268000 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
9 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
10 Sobic.002G226400 EF hand family protein, putative, expressed -
11 Sobic.002G244400 EF hand family protein, expressed -
12 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
13 Sobic.003G334000 expressed protein -
14 Sobic.009G015700 actin-depolymerizing factor, putative, expressed K05765: cofilin
15 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
16 Sobic.006G097200 cation transport regulator-like protein 1, putative, expressed -
17 Sobic.007G181400 TraB family protein, putative, expressed -
18 Sobic.003G378600 "oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor"(PubMedID : 26465154)@NADH dehydrogenase I subunit N, putative, expressed -
19 Sobic.002G277100 -(PubMedID : 29017446)@triosephosphate isomerase, chloroplast precursor, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
20 Sobic.002G370600 - -


Gene co-expression network
sample Sobic001G407600 Sobic001G407600 Sobic001G489000 Sobic001G489000 Sobic001G407600--Sobic001G489000 Sobic005G172400 Sobic005G172400 Sobic001G407600--Sobic005G172400 Sobic001G202600 Sobic001G202600 Sobic001G407600--Sobic001G202600 Sobic002G051100 Sobic002G051100 Sobic001G407600--Sobic002G051100 Sobic002G279700 Sobic002G279700 Sobic001G407600--Sobic002G279700 Sobic009G172600 Sobic009G172600 Sobic001G407600--Sobic009G172600 Sobic001G020100 Sobic001G020100 Sobic001G407600--Sobic001G020100 Sobic004G268000 Sobic004G268000 Sobic001G407600--Sobic004G268000 Sobic009G140600 Sobic009G140600 Sobic001G407600--Sobic009G140600 Sobic001G489000--Sobic002G051100 Sobic001G489000--Sobic009G140600 Sobic005G194100 Sobic005G194100 Sobic001G489000--Sobic005G194100 Sobic003G387800 Sobic003G387800 Sobic001G489000--Sobic003G387800 Sobic009G183700 Sobic009G183700 Sobic001G489000--Sobic009G183700 Sobic008G102000 Sobic008G102000 Sobic001G489000--Sobic008G102000 Sobic003G002300 Sobic003G002300 Sobic001G489000--Sobic003G002300 Sobic008G134800 Sobic008G134800 Sobic001G489000--Sobic008G134800 Sobic007G004800 Sobic007G004800 Sobic001G489000--Sobic007G004800 Sobic001G104600 Sobic001G104600 Sobic005G172400--Sobic001G104600 Sobic001G015200 Sobic001G015200 Sobic005G172400--Sobic001G015200 Sobic003G103300 Sobic003G103300 Sobic005G172400--Sobic003G103300 Sobic005G062700 Sobic005G062700 Sobic005G172400--Sobic005G062700 Sobic010G101000 Sobic010G101000 Sobic005G172400--Sobic010G101000 Sobic004G305900 Sobic004G305900 Sobic005G172400--Sobic004G305900 Sobic001G289500 Sobic001G289500 Sobic005G172400--Sobic001G289500 Sobic001G317800 Sobic001G317800 Sobic005G172400--Sobic001G317800 Sobic002G047400 Sobic002G047400 Sobic005G172400--Sobic002G047400 Sobic009G091800 Sobic009G091800 Sobic001G202600--Sobic009G091800 Sobic002G288300 Sobic002G288300 Sobic001G202600--Sobic002G288300 Sobic004G251500 Sobic004G251500 Sobic001G202600--Sobic004G251500 Sobic001G202600--Sobic001G489000 Sobic004G311100 Sobic004G311100 Sobic001G202600--Sobic004G311100 Sobic008G112300 Sobic008G112300 Sobic001G202600--Sobic008G112300 Sobic007G116950 Sobic007G116950 Sobic001G202600--Sobic007G116950 Sobic009G091850 Sobic009G091850 Sobic001G202600--Sobic009G091850 Sobic008G051000 Sobic008G051000 Sobic001G202600--Sobic008G051000 Sobic002G051100--Sobic003G002300 Sobic001G519800 Sobic001G519800 Sobic002G051100--Sobic001G519800 Sobic004G272100 Sobic004G272100 Sobic002G051100--Sobic004G272100 Sobic002G051100--Sobic008G102000 Sobic002G051100--Sobic001G489000 Sobic002G051100--Sobic009G140600 Sobic010G201700 Sobic010G201700 Sobic002G051100--Sobic010G201700 Sobic002G051100--Sobic003G387800 Sobic002G051100--Sobic007G004800 Sobic002G128900 Sobic002G128900 Sobic002G279700--Sobic002G128900 Sobic006G261700 Sobic006G261700 Sobic002G279700--Sobic006G261700 Sobic001G295300 Sobic001G295300 Sobic002G279700--Sobic001G295300 Sobic002G200900 Sobic002G200900 Sobic002G279700--Sobic002G200900 Sobic002G233700 Sobic002G233700 Sobic002G279700--Sobic002G233700 Sobic008G188600 Sobic008G188600 Sobic002G279700--Sobic008G188600 Sobic002G279700--Sobic001G020100 Sobic008G006200 Sobic008G006200 Sobic002G279700--Sobic008G006200 Sobic004G307400 Sobic004G307400 Sobic002G279700--Sobic004G307400 Sobic007G181400 Sobic007G181400 Sobic009G172600--Sobic007G181400 Sobic009G172600--Sobic003G103300 Sobic009G172600--Sobic005G172400 Sobic003G419900 Sobic003G419900 Sobic009G172600--Sobic003G419900 Sobic001G276300 Sobic001G276300 Sobic009G172600--Sobic001G276300 Sobic004G359600 Sobic004G359600 Sobic009G172600--Sobic004G359600 Sobic009G172600--Sobic001G015200 Sobic007G053800 Sobic007G053800 Sobic009G172600--Sobic007G053800 Sobic003G378600 Sobic003G378600 Sobic009G172600--Sobic003G378600 Sobic001G491000 Sobic001G491000 Sobic001G020100--Sobic001G491000 Sobic003G370000 Sobic003G370000 Sobic001G020100--Sobic003G370000 Sobic001G020100--Sobic001G289500 Sobic007G161500 Sobic007G161500 Sobic001G020100--Sobic007G161500 Sobic006G130300 Sobic006G130300 Sobic001G020100--Sobic006G130300 Sobic005G056400 Sobic005G056400 Sobic001G020100--Sobic005G056400 Sobic001G076900 Sobic001G076900 Sobic001G020100--Sobic001G076900 Sobic006G238200 Sobic006G238200 Sobic001G020100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic001G020100--Sobic001G100000 Sobic004G305800 Sobic004G305800 Sobic004G268000--Sobic004G305800 Sobic009G129300 Sobic009G129300 Sobic004G268000--Sobic009G129300 Sobic004G268000--Sobic001G491000 Sobic002G275300 Sobic002G275300 Sobic004G268000--Sobic002G275300 Sobic004G268000--Sobic010G201700 Sobic004G268000--Sobic001G020100 Sobic004G268000--Sobic006G238200 Sobic002G370600 Sobic002G370600 Sobic004G268000--Sobic002G370600 Sobic010G181300 Sobic010G181300 Sobic004G268000--Sobic010G181300 Sobic009G140600--Sobic003G002300 Sobic009G140600--Sobic008G102000 Sobic009G140600--Sobic003G378600 Sobic009G140600--Sobic003G387800 Sobic001G122300 Sobic001G122300 Sobic009G140600--Sobic001G122300 Sobic009G140600--Sobic005G194100 Sobic007G052400 Sobic007G052400 Sobic009G140600--Sobic007G052400 Sobic001G005200 Sobic001G005200 Sobic009G140600--Sobic001G005200 Sobic009G043000 Sobic009G043000 Sobic009G140600--Sobic009G043000
Octagon: transcription factors


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