Gene annotation
Transcriptome id Sobic.002G339600.1
Synonym Sb02g036420
Functional annotation elongation factor Tu, putative, expressed
UniProt H0I4B6 , C5XBK5
Pfam PF03144 PF03143 PF00009
Panther DB PTHR23115 PTHR23115:SF157
NCBI CDD -
KEGG Orthology K03231; elongation factor 1-alpha
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G07930 : GTP binding Elongation factor Tu family protein
RAP-DB (Rice) LOC_Os03g08020.1 : elongation factor Tu, putative, expressed
MaizeGDB (Corn) Zm00025a043311 , Zm00025a043337 , Zm00025a043313 , Zm00025a048393 , Zm00025a036927 , Zm00025a036925 , Zm00025a042244 , Zm00025a014911 , Zm00025a043309 , Zm00025a043304
Brachypodium PNS24237 , KQJ87649 , KQJ87648 , KQK12914 , KQK12915 , KQK12916 , KQK12917 , KQK12913 , KQK22190
Barley HORVU0Hr1G017020.4 , HORVU4Hr1G056830.1 , HORVU4Hr1G056830.2 , HORVU4Hr1G056830.3 , HORVU5Hr1G100200.4 , HORVU5Hr1G100200.5 , HORVU5Hr1G100200.2 , HORVU5Hr1G100200.3 , HORVU5Hr1G100200.1 , HORVU6Hr1G085370.1 , HORVU6Hr1G085370.2 , HORVU6Hr1G085370.4 , HORVU6Hr1G085370.7 , HORVU6Hr1G085370.6 , HORVU0Hr1G017020.1 , HORVU0Hr1G017020.3 , HORVU4Hr1G056740.8 , HORVU4Hr1G056740.2 , HORVU4Hr1G056740.3 , HORVU4Hr1G056740.1 , HORVU5Hr1G100700.3 , HORVU4Hr1G056740.7 , HORVU5Hr1G100700.1 , HORVU4Hr1G056740.5 , HORVU6Hr1G085320.2 , HORVU6Hr1G085320.3 , HORVU4Hr1G056740.6 , HORVU5Hr1G100700.2 , HORVU4Hr1G056740.4 , HORVU6Hr1G085320.1 , HORVU4Hr1G056820.4 , HORVU4Hr1G056820.3 , HORVU4Hr1G056820.2 , HORVU4Hr1G056820.1 , HORVU0Hr1G017020.2
Wheat TraesCS4B02G196800 , TraesCS4B02G196800 , TraesCS2D02G320500 , TraesCS4D02G197200 , TraesCS2A02G083000 , TraesCS2B02G097100 , TraesCS2B02G097300 , TraesCS5A02G415600 , TraesCS5B02G418200 , TraesCS5B02G418200 , TraesCS4B02G196900 , TraesCS5B02G418100 , TraesCS2D02G080900 , TraesCS5D02G423300 , TraesCS5D02G423300 , TraesCS5D02G423300 , TraesCS4A02G107600 , TraesCS5D02G423400 , TraesCS2A02G083300 , TraesCS5A02G415400 , TraesCS4B02G196900 , TraesCS4A02G107700 , TraesCS2D02G080800 , TraesCS4D02G197100
Populus PNT22655 , PNT17990 , PNT17991 , PNT17992 , PNT17993 , PNT17987 , PNT17989 , PNT17988 , PNT31383 , PNT31382 , PNS98617 , PNS98616 , PNS98618 , PNT18006 , PNT18005


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cDNA sequences
Sobic.002G339600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G339500 expressed protein -
2 Sobic.006G215600 SHR5-receptor-like kinase, putative, expressed -
3 Sobic.002G111200 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
4 Sobic.003G443500 cyclase/dehydrase family protein, expressed -
5 Sobic.002G128900 thioesterase family protein, putative, expressed -
6 Sobic.004G151500 AP2 domain containing protein, expressed -
7 Sobic.001G257700 ribosomal protein S18 containing protein, expressed -
8 Sobic.002G309900 cupin 2, conserved barrel domain protein, putative, expressed K14977: ylbA, (S)-ureidoglycine aminohydrolase
9 Sobic.007G033800 basic helix-loop-helix DND-binding domain containing protein, expressed -
10 Sobic.010G140600 bolA, putative, expressed -
11 Sobic.001G295300 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
12 Sobic.001G129000 DnaK family protein, putative, expressed -
13 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
14 Sobic.003G218900 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.006G173600 serine racemase, putative, expressed K12235: serine racemase
16 Sobic.010G023700 Transketolase(PubMedID : 26186930)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
17 Sobic.006G260800 phosphatidate cytidylyltransferase, putative, expressed K18678: phytol kinase
18 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
19 Sobic.004G268300 phosphatase, putative, expressed -
20 Sobic.002G102200 acetyltransferase, GNAT family, putative, expressed -


Gene co-expression network
sample Sobic002G339600 Sobic002G339600 Sobic001G339500 Sobic001G339500 Sobic002G339600--Sobic001G339500 Sobic006G215600 Sobic006G215600 Sobic002G339600--Sobic006G215600 Sobic002G111200 Sobic002G111200 Sobic002G339600--Sobic002G111200 Sobic003G443500 Sobic003G443500 Sobic002G339600--Sobic003G443500 Sobic002G128900 Sobic002G128900 Sobic002G339600--Sobic002G128900 Sobic004G151500 Sobic004G151500 Sobic002G339600--Sobic004G151500 Sobic001G257700 Sobic001G257700 Sobic002G339600--Sobic001G257700 Sobic002G309900 Sobic002G309900 Sobic002G339600--Sobic002G309900 Sobic007G033800 Sobic007G033800 Sobic002G339600--Sobic007G033800 Sobic001G339500--Sobic002G339600 Sobic001G339500--Sobic002G111200 Sobic003G349200 Sobic003G349200 Sobic001G339500--Sobic003G349200 Sobic001G339500--Sobic006G215600 Sobic004G295300 Sobic004G295300 Sobic001G339500--Sobic004G295300 Sobic001G339500--Sobic007G033800 Sobic006G011300 Sobic006G011300 Sobic001G339500--Sobic006G011300 Sobic003G224100 Sobic003G224100 Sobic001G339500--Sobic003G224100 Sobic006G130800 Sobic006G130800 Sobic001G339500--Sobic006G130800 Sobic006G215600--Sobic004G151500 Sobic006G215600--Sobic001G339500 Sobic006G215600--Sobic002G339600 Sobic002G421900 Sobic002G421900 Sobic006G215600--Sobic002G421900 Sobic006G215600--Sobic003G349200 Sobic006G215600--Sobic003G224100 Sobic003G014300 Sobic003G014300 Sobic006G215600--Sobic003G014300 Sobic006G258700 Sobic006G258700 Sobic006G215600--Sobic006G258700 Sobic010G269400 Sobic010G269400 Sobic006G215600--Sobic010G269400 Sobic002G111200--Sobic001G339500 Sobic001G014800 Sobic001G014800 Sobic002G111200--Sobic001G014800 Sobic001G219300 Sobic001G219300 Sobic002G111200--Sobic001G219300 Sobic002G111200--Sobic002G339600 Sobic010G277100 Sobic010G277100 Sobic002G111200--Sobic010G277100 Sobic008G118900 Sobic008G118900 Sobic002G111200--Sobic008G118900 Sobic002G111200--Sobic002G309900 Sobic002G209400 Sobic002G209400 Sobic002G111200--Sobic002G209400 Sobic009G004600 Sobic009G004600 Sobic002G111200--Sobic009G004600 Sobic002G036000 Sobic002G036000 Sobic003G443500--Sobic002G036000 Sobic001G391900 Sobic001G391900 Sobic003G443500--Sobic001G391900 Sobic001G073900 Sobic001G073900 Sobic003G443500--Sobic001G073900 Sobic001G065600 Sobic001G065600 Sobic003G443500--Sobic001G065600 Sobic002G102200 Sobic002G102200 Sobic003G443500--Sobic002G102200 Sobic008G001900 Sobic008G001900 Sobic003G443500--Sobic008G001900 Sobic006G101500 Sobic006G101500 Sobic003G443500--Sobic006G101500 Sobic005G188600 Sobic005G188600 Sobic003G443500--Sobic005G188600 Sobic001G317400 Sobic001G317400 Sobic003G443500--Sobic001G317400 Sobic010G140600 Sobic010G140600 Sobic002G128900--Sobic010G140600 Sobic002G279700 Sobic002G279700 Sobic002G128900--Sobic002G279700 Sobic001G295300 Sobic001G295300 Sobic002G128900--Sobic001G295300 Sobic002G200900 Sobic002G200900 Sobic002G128900--Sobic002G200900 Sobic004G281900 Sobic004G281900 Sobic002G128900--Sobic004G281900 Sobic002G072400 Sobic002G072400 Sobic002G128900--Sobic002G072400 Sobic008G096800 Sobic008G096800 Sobic002G128900--Sobic008G096800 Sobic002G128900--Sobic010G269400 Sobic008G144800 Sobic008G144800 Sobic002G128900--Sobic008G144800 Sobic004G298900 Sobic004G298900 Sobic004G151500--Sobic004G298900 Sobic004G268300 Sobic004G268300 Sobic004G151500--Sobic004G268300 Sobic004G151500--Sobic003G014300 Sobic003G037300 Sobic003G037300 Sobic004G151500--Sobic003G037300 Sobic008G052900 Sobic008G052900 Sobic004G151500--Sobic008G052900 Sobic009G062400 Sobic009G062400 Sobic004G151500--Sobic009G062400 Sobic004G151500--Sobic006G258700 Sobic006G260800 Sobic006G260800 Sobic004G151500--Sobic006G260800 Sobic001G183000 Sobic001G183000 Sobic004G151500--Sobic001G183000 Sobic006G105800 Sobic006G105800 Sobic001G257700--Sobic006G105800 Sobic008G133600 Sobic008G133600 Sobic001G257700--Sobic008G133600 Sobic003G043300 Sobic003G043300 Sobic001G257700--Sobic003G043300 Sobic003G220800 Sobic003G220800 Sobic001G257700--Sobic003G220800 Sobic001G257700--Sobic002G309900 Sobic007G005400 Sobic007G005400 Sobic001G257700--Sobic007G005400 Sobic002G091600 Sobic002G091600 Sobic001G257700--Sobic002G091600 Sobic001G003100 Sobic001G003100 Sobic001G257700--Sobic001G003100 Sobic001G136800 Sobic001G136800 Sobic001G257700--Sobic001G136800 Sobic002G309900--Sobic002G091600 Sobic002G131200 Sobic002G131200 Sobic002G309900--Sobic002G131200 Sobic008G070800 Sobic008G070800 Sobic002G309900--Sobic008G070800 Sobic001G085600 Sobic001G085600 Sobic002G309900--Sobic001G085600 Sobic001G303100 Sobic001G303100 Sobic002G309900--Sobic001G303100 Sobic006G092000 Sobic006G092000 Sobic002G309900--Sobic006G092000 Sobic005G100600 Sobic005G100600 Sobic002G309900--Sobic005G100600 Sobic002G309900--Sobic002G111200 Sobic002G309900--Sobic001G257700 Sobic005G033200 Sobic005G033200 Sobic007G033800--Sobic005G033200 Sobic007G033800--Sobic001G339500 Sobic010G023700 Sobic010G023700 Sobic007G033800--Sobic010G023700 Sobic001G031100 Sobic001G031100 Sobic007G033800--Sobic001G031100 Sobic006G173600 Sobic006G173600 Sobic007G033800--Sobic006G173600 Sobic007G033800--Sobic002G339600 Sobic001G071800 Sobic001G071800 Sobic007G033800--Sobic001G071800 Sobic007G033800--Sobic002G111200 Sobic007G033800--Sobic002G421900
Octagon: transcription factors


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