Gene annotation
Transcriptome id Sobic.001G257700.1
Synonym Sb01g023140
Functional annotation ribosomal protein S18 containing protein, expressed
UniProt C5WN57
Pfam PF01084
Panther DB PTHR13479:SF44 PTHR13479
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003735; structural constituent of ribosome GO:0005622intracellular GO:0005840ribosome GO:0006412translation


Orthologs (automatic annotation)
TAIR AT1G07210 : Ribosomal protein S18
RAP-DB (Rice) LOC_Os10g35690.1 : ribosomal protein S18 containing protein, expressed
MaizeGDB (Corn) Zm00025a026157
Brachypodium -
Barley HORVU1Hr1G062620.16 , HORVU1Hr1G062620.15 , HORVU1Hr1G062620.7 , HORVU1Hr1G062620.6 , HORVU1Hr1G062620.5 , HORVU1Hr1G062620.4 , HORVU1Hr1G062620.3 , HORVU1Hr1G062620.2 , HORVU1Hr1G062620.1 , HORVU1Hr1G062620.9 , HORVU1Hr1G062620.14 , HORVU1Hr1G062620.13 , HORVU1Hr1G062620.12 , HORVU1Hr1G062620.11 , HORVU1Hr1G062620.10
Wheat TraesCS1B02G257800 , TraesCS1A02G247200
Populus -


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cDNA sequences
Sobic.001G257700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G105800 tyrosyl-tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
2 Sobic.008G133600 diaminopimelate epimerase, chloroplast precursor, putative, expressed K01778: diaminopimelate epimerase
3 Sobic.003G043300 early fruit mRNA, putative, expressed -
4 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
5 Sobic.002G309900 cupin 2, conserved barrel domain protein, putative, expressed K14977: ylbA, (S)-ureidoglycine aminohydrolase
6 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
7 Sobic.002G091600 methyltransferase, putative, expressed -
8 Sobic.001G003100 T-complex protein, putative, expressed -
9 Sobic.001G136800 dual specificity protein phosphatase, putative, expressed -
10 Sobic.004G040900 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5
11 Sobic.008G051300 acyl-CoA synthetase protein, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
12 Sobic.004G070700 GA16396-PA, putative, expressed -
13 Sobic.002G339600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
14 Sobic.005G082200 ACT domain containing protein, expressed K01653: E2.2.1.6S, ilvH, acetolactate synthase I/III small subunit
15 Sobic.004G359100 expressed protein -
16 Sobic.002G383800 GTP-binding protein, putative, expressed K06944: uncharacterized protein
17 Sobic.003G083400 cytoskeletal protein, putative, expressed -
18 Sobic.001G339500 expressed protein -
19 Sobic.004G268300 phosphatase, putative, expressed -
20 Sobic.002G343400 tic20, putative, expressed -


Gene co-expression network
sample Sobic001G257700 Sobic001G257700 Sobic006G105800 Sobic006G105800 Sobic001G257700--Sobic006G105800 Sobic008G133600 Sobic008G133600 Sobic001G257700--Sobic008G133600 Sobic003G043300 Sobic003G043300 Sobic001G257700--Sobic003G043300 Sobic003G220800 Sobic003G220800 Sobic001G257700--Sobic003G220800 Sobic002G309900 Sobic002G309900 Sobic001G257700--Sobic002G309900 Sobic007G005400 Sobic007G005400 Sobic001G257700--Sobic007G005400 Sobic002G091600 Sobic002G091600 Sobic001G257700--Sobic002G091600 Sobic001G003100 Sobic001G003100 Sobic001G257700--Sobic001G003100 Sobic001G136800 Sobic001G136800 Sobic001G257700--Sobic001G136800 Sobic003G085100 Sobic003G085100 Sobic006G105800--Sobic003G085100 Sobic006G105800--Sobic007G005400 Sobic003G150800 Sobic003G150800 Sobic006G105800--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic006G105800--Sobic005G111550 Sobic006G055800 Sobic006G055800 Sobic006G105800--Sobic006G055800 Sobic004G336000 Sobic004G336000 Sobic006G105800--Sobic004G336000 Sobic008G001900 Sobic008G001900 Sobic006G105800--Sobic008G001900 Sobic004G235600 Sobic004G235600 Sobic006G105800--Sobic004G235600 Sobic005G001700 Sobic005G001700 Sobic006G105800--Sobic005G001700 Sobic008G133600--Sobic001G257700 Sobic002G178601 Sobic002G178601 Sobic008G133600--Sobic002G178601 Sobic001G043800 Sobic001G043800 Sobic008G133600--Sobic001G043800 Sobic004G040900 Sobic004G040900 Sobic008G133600--Sobic004G040900 Sobic002G431300 Sobic002G431300 Sobic008G133600--Sobic002G431300 Sobic008G133600--Sobic006G105800 Sobic010G262000 Sobic010G262000 Sobic008G133600--Sobic010G262000 Sobic002G209400 Sobic002G209400 Sobic008G133600--Sobic002G209400 Sobic009G238850 Sobic009G238850 Sobic008G133600--Sobic009G238850 Sobic003G043300--Sobic003G220800 Sobic010G074300 Sobic010G074300 Sobic003G043300--Sobic010G074300 Sobic006G175800 Sobic006G175800 Sobic003G043300--Sobic006G175800 Sobic010G251300 Sobic010G251300 Sobic003G043300--Sobic010G251300 Sobic003G043300--Sobic001G136800 Sobic003G043300--Sobic001G257700 Sobic008G077500 Sobic008G077500 Sobic003G043300--Sobic008G077500 Sobic003G043300--Sobic004G040900 Sobic003G051000 Sobic003G051000 Sobic003G043300--Sobic003G051000 Sobic009G084000 Sobic009G084000 Sobic003G220800--Sobic009G084000 Sobic001G100900 Sobic001G100900 Sobic003G220800--Sobic001G100900 Sobic003G220800--Sobic003G043300 Sobic003G220800--Sobic010G074300 Sobic001G241100 Sobic001G241100 Sobic003G220800--Sobic001G241100 Sobic002G359400 Sobic002G359400 Sobic003G220800--Sobic002G359400 Sobic002G047700 Sobic002G047700 Sobic003G220800--Sobic002G047700 Sobic006G092400 Sobic006G092400 Sobic003G220800--Sobic006G092400 Sobic010G147000 Sobic010G147000 Sobic003G220800--Sobic010G147000 Sobic002G309900--Sobic002G091600 Sobic002G131200 Sobic002G131200 Sobic002G309900--Sobic002G131200 Sobic008G070800 Sobic008G070800 Sobic002G309900--Sobic008G070800 Sobic001G085600 Sobic001G085600 Sobic002G309900--Sobic001G085600 Sobic001G303100 Sobic001G303100 Sobic002G309900--Sobic001G303100 Sobic006G092000 Sobic006G092000 Sobic002G309900--Sobic006G092000 Sobic005G100600 Sobic005G100600 Sobic002G309900--Sobic005G100600 Sobic002G111200 Sobic002G111200 Sobic002G309900--Sobic002G111200 Sobic002G309900--Sobic001G257700 Sobic007G005400--Sobic003G085100 Sobic002G118200 Sobic002G118200 Sobic007G005400--Sobic002G118200 Sobic005G084500 Sobic005G084500 Sobic007G005400--Sobic005G084500 Sobic004G238200 Sobic004G238200 Sobic007G005400--Sobic004G238200 Sobic007G005400--Sobic003G150800 Sobic003G287900 Sobic003G287900 Sobic007G005400--Sobic003G287900 Sobic005G231100 Sobic005G231100 Sobic007G005400--Sobic005G231100 Sobic004G337400 Sobic004G337400 Sobic007G005400--Sobic004G337400 Sobic007G185700 Sobic007G185700 Sobic007G005400--Sobic007G185700 Sobic004G193700 Sobic004G193700 Sobic002G091600--Sobic004G193700 Sobic003G110800 Sobic003G110800 Sobic002G091600--Sobic003G110800 Sobic007G136200 Sobic007G136200 Sobic002G091600--Sobic007G136200 Sobic003G119600 Sobic003G119600 Sobic002G091600--Sobic003G119600 Sobic001G097100 Sobic001G097100 Sobic002G091600--Sobic001G097100 Sobic001G530900 Sobic001G530900 Sobic002G091600--Sobic001G530900 Sobic002G091600--Sobic005G084500 Sobic009G215500 Sobic009G215500 Sobic002G091600--Sobic009G215500 Sobic005G106600 Sobic005G106600 Sobic002G091600--Sobic005G106600 Sobic003G083400 Sobic003G083400 Sobic001G003100--Sobic003G083400 Sobic004G359100 Sobic004G359100 Sobic001G003100--Sobic004G359100 Sobic001G003100--Sobic002G431300 Sobic001G003100--Sobic001G257700 Sobic001G003100--Sobic004G336000 Sobic006G261700 Sobic006G261700 Sobic001G003100--Sobic006G261700 Sobic002G383800 Sobic002G383800 Sobic001G003100--Sobic002G383800 Sobic006G050000 Sobic006G050000 Sobic001G003100--Sobic006G050000 Sobic004G018000 Sobic004G018000 Sobic001G003100--Sobic004G018000 Sobic003G354600 Sobic003G354600 Sobic001G136800--Sobic003G354600 Sobic005G199400 Sobic005G199400 Sobic001G136800--Sobic005G199400 Sobic010G125500 Sobic010G125500 Sobic001G136800--Sobic010G125500 Sobic003G264800 Sobic003G264800 Sobic001G136800--Sobic003G264800 Sobic004G244900 Sobic004G244900 Sobic001G136800--Sobic004G244900 Sobic009G201300 Sobic009G201300 Sobic001G136800--Sobic009G201300 Sobic001G136800--Sobic005G106600 Sobic003G311900 Sobic003G311900 Sobic001G136800--Sobic003G311900 Sobic001G136800--Sobic002G091600
Octagon: transcription factors


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