Gene annotation
Transcriptome id Sobic.003G083400.1
Synonym Sb03g007020
Functional annotation cytoskeletal protein, putative, expressed
UniProt C5XQT5
Pfam PF13414 PF00564
Panther DB PTHR22904 PTHR22904:SF331
NCBI CDD KOG4151; Myosin assembly protein/sexual cycle protein and related proteins
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G62390 : Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
RAP-DB (Rice) LOC_Os09g04990.1 : cytoskeletal protein, putative, expressed
MaizeGDB (Corn) Zm00025a023580
Brachypodium PNT75465 , KQK17200
Barley HORVU7Hr1G070140.17 , HORVU7Hr1G070140.16 , HORVU7Hr1G070140.15 , HORVU7Hr1G070140.12 , HORVU7Hr1G070140.11 , HORVU7Hr1G070140.10 , HORVU7Hr1G070140.6 , HORVU7Hr1G070140.2 , HORVU7Hr1G070140.1 , HORVU5Hr1G051200.3 , HORVU5Hr1G051200.2 , HORVU5Hr1G051200.1 , HORVU5Hr1G051200.5 , HORVU5Hr1G051200.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G359100 expressed protein -
2 Sobic.002G411400 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein
3 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
5 Sobic.004G238900 methyltransferase domain containing protein, putative, expressed -
6 Sobic.006G088000 translocon Tic40, putative, expressed -
7 Sobic.004G011300 S1 RNA binding domain containing protein, expressed -
8 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
9 Sobic.008G130900 ribosomal protein S6, putative, expressed -
10 Sobic.001G003100 T-complex protein, putative, expressed -
11 Sobic.003G033100 RNA methyltransferase protein, putative, expressed -
12 Sobic.006G105800 tyrosyl-tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
13 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
14 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
15 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
16 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
17 Sobic.003G271900 expressed protein -
18 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
19 Sobic.005G231100 alpha-hemolysin, putative, expressed K08998: uncharacterized protein
20 Sobic.008G183700 cbbY protein-related, putative, expressed -


Gene co-expression network
sample Sobic003G083400 Sobic003G083400 Sobic004G359100 Sobic004G359100 Sobic003G083400--Sobic004G359100 Sobic002G411400 Sobic002G411400 Sobic003G083400--Sobic002G411400 Sobic003G128400 Sobic003G128400 Sobic003G083400--Sobic003G128400 Sobic001G375000 Sobic001G375000 Sobic003G083400--Sobic001G375000 Sobic004G238900 Sobic004G238900 Sobic003G083400--Sobic004G238900 Sobic006G088000 Sobic006G088000 Sobic003G083400--Sobic006G088000 Sobic004G011300 Sobic004G011300 Sobic003G083400--Sobic004G011300 Sobic004G336000 Sobic004G336000 Sobic003G083400--Sobic004G336000 Sobic008G130900 Sobic008G130900 Sobic003G083400--Sobic008G130900 Sobic002G343400 Sobic002G343400 Sobic004G359100--Sobic002G343400 Sobic002G431300 Sobic002G431300 Sobic004G359100--Sobic002G431300 Sobic005G082200 Sobic005G082200 Sobic004G359100--Sobic005G082200 Sobic004G359100--Sobic004G238900 Sobic003G067100 Sobic003G067100 Sobic004G359100--Sobic003G067100 Sobic010G255100 Sobic010G255100 Sobic004G359100--Sobic010G255100 Sobic004G359100--Sobic003G083400 Sobic004G359100--Sobic001G375000 Sobic004G359100--Sobic006G088000 Sobic002G411400--Sobic003G083400 Sobic005G231100 Sobic005G231100 Sobic002G411400--Sobic005G231100 Sobic003G150800 Sobic003G150800 Sobic002G411400--Sobic003G150800 Sobic005G072100 Sobic005G072100 Sobic002G411400--Sobic005G072100 Sobic003G085100 Sobic003G085100 Sobic002G411400--Sobic003G085100 Sobic002G411400--Sobic008G130900 Sobic007G005400 Sobic007G005400 Sobic002G411400--Sobic007G005400 Sobic003G141100 Sobic003G141100 Sobic002G411400--Sobic003G141100 Sobic002G411400--Sobic004G011300 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G045300 Sobic003G045300 Sobic003G128400--Sobic003G045300 Sobic005G184300 Sobic005G184300 Sobic003G128400--Sobic005G184300 Sobic004G003900 Sobic004G003900 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic002G156100 Sobic002G156100 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic003G128400--Sobic010G255100 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic010G027200 Sobic010G027200 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic004G238900--Sobic003G067100 Sobic005G014700 Sobic005G014700 Sobic004G238900--Sobic005G014700 Sobic004G238900--Sobic004G359100 Sobic001G102500 Sobic001G102500 Sobic004G238900--Sobic001G102500 Sobic004G238900--Sobic002G343400 Sobic003G369400 Sobic003G369400 Sobic004G238900--Sobic003G369400 Sobic007G023200 Sobic007G023200 Sobic004G238900--Sobic007G023200 Sobic004G238900--Sobic010G255100 Sobic004G163800 Sobic004G163800 Sobic004G238900--Sobic004G163800 Sobic006G088000--Sobic001G375000 Sobic006G088000--Sobic003G128400 Sobic006G088000--Sobic004G003900 Sobic001G382800 Sobic001G382800 Sobic006G088000--Sobic001G382800 Sobic006G088000--Sobic003G162800 Sobic006G088000--Sobic003G045300 Sobic001G249400 Sobic001G249400 Sobic006G088000--Sobic001G249400 Sobic006G088000--Sobic010G255100 Sobic008G090900 Sobic008G090900 Sobic006G088000--Sobic008G090900 Sobic006G106400 Sobic006G106400 Sobic004G011300--Sobic006G106400 Sobic009G148500 Sobic009G148500 Sobic004G011300--Sobic009G148500 Sobic001G495200 Sobic001G495200 Sobic004G011300--Sobic001G495200 Sobic004G011300--Sobic004G336000 Sobic002G181000 Sobic002G181000 Sobic004G011300--Sobic002G181000 Sobic002G043600 Sobic002G043600 Sobic004G011300--Sobic002G043600 Sobic008G039600 Sobic008G039600 Sobic004G011300--Sobic008G039600 Sobic008G073100 Sobic008G073100 Sobic004G011300--Sobic008G073100 Sobic003G301300 Sobic003G301300 Sobic004G011300--Sobic003G301300 Sobic001G309300 Sobic001G309300 Sobic004G336000--Sobic001G309300 Sobic004G336000--Sobic001G495200 Sobic004G336000--Sobic008G073100 Sobic001G291900 Sobic001G291900 Sobic004G336000--Sobic001G291900 Sobic003G432500 Sobic003G432500 Sobic004G336000--Sobic003G432500 Sobic004G336000--Sobic006G055800 Sobic004G336000--Sobic004G011300 Sobic003G085000 Sobic003G085000 Sobic004G336000--Sobic003G085000 Sobic003G387100 Sobic003G387100 Sobic004G336000--Sobic003G387100 Sobic008G130900--Sobic001G375000 Sobic008G130900--Sobic006G055800 Sobic008G130900--Sobic003G128400 Sobic005G002900 Sobic005G002900 Sobic008G130900--Sobic005G002900 Sobic009G131600 Sobic009G131600 Sobic008G130900--Sobic009G131600 Sobic008G130900--Sobic003G432500 Sobic008G130900--Sobic002G181000 Sobic001G083100 Sobic001G083100 Sobic008G130900--Sobic001G083100 Sobic002G131700 Sobic002G131700 Sobic008G130900--Sobic002G131700
Octagon: transcription factors


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