Gene annotation
Transcriptome id Sobic.001G003100.1
Synonym CH-CPN60A, SLP, Sb01g000380, CPN60A
Functional annotation T-complex protein, putative, expressed
UniProt C5WRV5
Pfam PF00118
Panther DB PTHR11353 PTHR11353:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT2G28000 : chaperonin-60alpha
RAP-DB (Rice) LOC_Os03g64210.1 : T-complex protein, putative, expressed
MaizeGDB (Corn) Zm00025a009132
Brachypodium KQK11974
Barley HORVU5Hr1G125130.1 , HORVU5Hr1G125130.3 , HORVU5Hr1G125130.2 , HORVU5Hr1G125130.4
Wheat TraesCS4A02G315500 , TraesCS4A02G315500 , TraesCS5B02G563900 , TraesCS5B02G563900 , TraesCS5D02G550700 , TraesCS5D02G550700
Populus -


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cDNA sequences
Sobic.001G003100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G083400 cytoskeletal protein, putative, expressed -
2 Sobic.004G359100 expressed protein -
3 Sobic.002G431300 uncharacterized ACR, YagE family COG1723 containing protein, expressed -
4 Sobic.001G257700 ribosomal protein S18 containing protein, expressed -
5 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
6 Sobic.006G261700 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
7 Sobic.002G383800 GTP-binding protein, putative, expressed K06944: uncharacterized protein
8 Sobic.006G050000 TBC domain containing protein, expressed -
9 Sobic.004G018000 bifunctional protein folD, putative, expressed -
10 Sobic.010G140600 bolA, putative, expressed -
11 Sobic.005G084800 expressed protein -
12 Sobic.001G402500 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5
13 Sobic.002G128900 thioesterase family protein, putative, expressed -
14 Sobic.002G131500 ABC transporter, ATP-binding protein, putative, expressed -
15 Sobic.006G186600 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
16 Sobic.010G171600 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04733: interleukin-1 receptor-associated kinase 4
17 Sobic.004G307400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
18 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
19 Sobic.002G279700 3-dehydroquinate synthase, putative, expressed K01735: 3-dehydroquinate synthase
20 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase


Gene co-expression network
sample Sobic001G003100 Sobic001G003100 Sobic003G083400 Sobic003G083400 Sobic001G003100--Sobic003G083400 Sobic004G359100 Sobic004G359100 Sobic001G003100--Sobic004G359100 Sobic002G431300 Sobic002G431300 Sobic001G003100--Sobic002G431300 Sobic001G257700 Sobic001G257700 Sobic001G003100--Sobic001G257700 Sobic004G336000 Sobic004G336000 Sobic001G003100--Sobic004G336000 Sobic006G261700 Sobic006G261700 Sobic001G003100--Sobic006G261700 Sobic002G383800 Sobic002G383800 Sobic001G003100--Sobic002G383800 Sobic006G050000 Sobic006G050000 Sobic001G003100--Sobic006G050000 Sobic004G018000 Sobic004G018000 Sobic001G003100--Sobic004G018000 Sobic003G083400--Sobic004G359100 Sobic002G411400 Sobic002G411400 Sobic003G083400--Sobic002G411400 Sobic003G128400 Sobic003G128400 Sobic003G083400--Sobic003G128400 Sobic001G375000 Sobic001G375000 Sobic003G083400--Sobic001G375000 Sobic004G238900 Sobic004G238900 Sobic003G083400--Sobic004G238900 Sobic006G088000 Sobic006G088000 Sobic003G083400--Sobic006G088000 Sobic004G011300 Sobic004G011300 Sobic003G083400--Sobic004G011300 Sobic003G083400--Sobic004G336000 Sobic008G130900 Sobic008G130900 Sobic003G083400--Sobic008G130900 Sobic002G343400 Sobic002G343400 Sobic004G359100--Sobic002G343400 Sobic004G359100--Sobic002G431300 Sobic005G082200 Sobic005G082200 Sobic004G359100--Sobic005G082200 Sobic004G359100--Sobic004G238900 Sobic003G067100 Sobic003G067100 Sobic004G359100--Sobic003G067100 Sobic010G255100 Sobic010G255100 Sobic004G359100--Sobic010G255100 Sobic004G359100--Sobic003G083400 Sobic004G359100--Sobic001G375000 Sobic004G359100--Sobic006G088000 Sobic002G431300--Sobic004G359100 Sobic003G234900 Sobic003G234900 Sobic002G431300--Sobic003G234900 Sobic004G163800 Sobic004G163800 Sobic002G431300--Sobic004G163800 Sobic002G043600 Sobic002G043600 Sobic002G431300--Sobic002G043600 Sobic006G128300 Sobic006G128300 Sobic002G431300--Sobic006G128300 Sobic006G186600 Sobic006G186600 Sobic002G431300--Sobic006G186600 Sobic006G038500 Sobic006G038500 Sobic002G431300--Sobic006G038500 Sobic002G431300--Sobic002G343400 Sobic003G232700 Sobic003G232700 Sobic002G431300--Sobic003G232700 Sobic006G105800 Sobic006G105800 Sobic001G257700--Sobic006G105800 Sobic008G133600 Sobic008G133600 Sobic001G257700--Sobic008G133600 Sobic003G043300 Sobic003G043300 Sobic001G257700--Sobic003G043300 Sobic003G220800 Sobic003G220800 Sobic001G257700--Sobic003G220800 Sobic002G309900 Sobic002G309900 Sobic001G257700--Sobic002G309900 Sobic007G005400 Sobic007G005400 Sobic001G257700--Sobic007G005400 Sobic002G091600 Sobic002G091600 Sobic001G257700--Sobic002G091600 Sobic001G257700--Sobic001G003100 Sobic001G136800 Sobic001G136800 Sobic001G257700--Sobic001G136800 Sobic001G309300 Sobic001G309300 Sobic004G336000--Sobic001G309300 Sobic001G495200 Sobic001G495200 Sobic004G336000--Sobic001G495200 Sobic008G073100 Sobic008G073100 Sobic004G336000--Sobic008G073100 Sobic001G291900 Sobic001G291900 Sobic004G336000--Sobic001G291900 Sobic003G432500 Sobic003G432500 Sobic004G336000--Sobic003G432500 Sobic006G055800 Sobic006G055800 Sobic004G336000--Sobic006G055800 Sobic004G336000--Sobic004G011300 Sobic003G085000 Sobic003G085000 Sobic004G336000--Sobic003G085000 Sobic003G387100 Sobic003G387100 Sobic004G336000--Sobic003G387100 Sobic002G279700 Sobic002G279700 Sobic006G261700--Sobic002G279700 Sobic009G140300 Sobic009G140300 Sobic006G261700--Sobic009G140300 Sobic008G171300 Sobic008G171300 Sobic006G261700--Sobic008G171300 Sobic001G020100 Sobic001G020100 Sobic006G261700--Sobic001G020100 Sobic004G307400 Sobic004G307400 Sobic006G261700--Sobic004G307400 SobicK031800 SobicK031800 Sobic006G261700--SobicK031800 Sobic004G343900 Sobic004G343900 Sobic006G261700--Sobic004G343900 Sobic008G188600 Sobic008G188600 Sobic006G261700--Sobic008G188600 Sobic001G254600 Sobic001G254600 Sobic006G261700--Sobic001G254600 Sobic008G070800 Sobic008G070800 Sobic002G383800--Sobic008G070800 Sobic003G221400 Sobic003G221400 Sobic002G383800--Sobic003G221400 Sobic001G355800 Sobic001G355800 Sobic002G383800--Sobic001G355800 Sobic001G333100 Sobic001G333100 Sobic002G383800--Sobic001G333100 Sobic002G131200 Sobic002G131200 Sobic002G383800--Sobic002G131200 Sobic008G054000 Sobic008G054000 Sobic002G383800--Sobic008G054000 Sobic003G311900 Sobic003G311900 Sobic002G383800--Sobic003G311900 Sobic002G311100 Sobic002G311100 Sobic002G383800--Sobic002G311100 Sobic004G131800 Sobic004G131800 Sobic002G383800--Sobic004G131800 Sobic001G145000 Sobic001G145000 Sobic006G050000--Sobic001G145000 Sobic009G129100 Sobic009G129100 Sobic006G050000--Sobic009G129100 Sobic006G050000--Sobic006G038500 Sobic006G256600 Sobic006G256600 Sobic006G050000--Sobic006G256600 Sobic001G465700 Sobic001G465700 Sobic006G050000--Sobic001G465700 Sobic004G054400 Sobic004G054400 Sobic006G050000--Sobic004G054400 Sobic006G050000--Sobic002G431300 Sobic004G263400 Sobic004G263400 Sobic006G050000--Sobic004G263400 Sobic003G193700 Sobic003G193700 Sobic006G050000--Sobic003G193700 Sobic001G178300 Sobic001G178300 Sobic004G018000--Sobic001G178300 Sobic008G116000 Sobic008G116000 Sobic004G018000--Sobic008G116000 Sobic001G537500 Sobic001G537500 Sobic004G018000--Sobic001G537500 Sobic001G486700 Sobic001G486700 Sobic004G018000--Sobic001G486700 Sobic004G018000--Sobic001G003100 Sobic004G344000 Sobic004G344000 Sobic004G018000--Sobic004G344000 Sobic001G462200 Sobic001G462200 Sobic004G018000--Sobic001G462200 Sobic002G393700 Sobic002G393700 Sobic004G018000--Sobic002G393700 Sobic001G116500 Sobic001G116500 Sobic004G018000--Sobic001G116500
Octagon: transcription factors


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