Gene annotation
Transcriptome id Sobic.006G050000.2,Sobic.006G050000.1
Synonym Sb06g013260
Functional annotation TBC domain containing protein, expressed
UniProt A0A1Z5RC95 , C5YEQ1
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF329 PTHR22957 PTHR22957:SF302
NCBI CDD KOG4567; GTPase-activating protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G13730 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os11g28990.1,LOC_Os04g30880.1 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055840
Brachypodium PNT63640 , KQJ88529 , KQJ88528 , KQJ82200
Barley -
Wheat TraesCS2A02G279800 , TraesCS2D02G278800 , TraesCS2D02G278800 , TraesCS2B02G297000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G145000 expressed protein K14376: poly(A) polymerase
2 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
3 Sobic.006G038500 tRNA-dihydrouridine synthase, putative, expressed K05539: tRNA-dihydrouridine synthase A
4 Sobic.006G256600 expressed protein -
5 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase
6 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
7 Sobic.002G431300 uncharacterized ACR, YagE family COG1723 containing protein, expressed -
8 Sobic.004G263400 expressed protein -
9 Sobic.003G193700 carbamoyl-phosphate synthase large chain, putative, expressed K01955: carB, carbamoyl-phosphate synthase large subunit
10 Sobic.010G109600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@angel, putative, expressed -
11 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
12 Sobic.009G030800 expressed protein -
13 Sobic.005G149400 maf, putative, expressed K06287: septum formation protein
14 Sobic.004G238900 methyltransferase domain containing protein, putative, expressed -
15 Sobic.007G029700 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
16 Sobic.004G359100 expressed protein -
17 Sobic.004G307400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
18 Sobic.001G120500 toc64, putative, expressed -
19 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
20 Sobic.008G172300 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2


Gene co-expression network
sample Sobic006G050000 Sobic006G050000 Sobic001G145000 Sobic001G145000 Sobic006G050000--Sobic001G145000 Sobic009G129100 Sobic009G129100 Sobic006G050000--Sobic009G129100 Sobic006G038500 Sobic006G038500 Sobic006G050000--Sobic006G038500 Sobic006G256600 Sobic006G256600 Sobic006G050000--Sobic006G256600 Sobic001G465700 Sobic001G465700 Sobic006G050000--Sobic001G465700 Sobic004G054400 Sobic004G054400 Sobic006G050000--Sobic004G054400 Sobic002G431300 Sobic002G431300 Sobic006G050000--Sobic002G431300 Sobic004G263400 Sobic004G263400 Sobic006G050000--Sobic004G263400 Sobic003G193700 Sobic003G193700 Sobic006G050000--Sobic003G193700 Sobic002G424700 Sobic002G424700 Sobic001G145000--Sobic002G424700 Sobic004G334300 Sobic004G334300 Sobic001G145000--Sobic004G334300 Sobic002G275700 Sobic002G275700 Sobic001G145000--Sobic002G275700 Sobic004G244900 Sobic004G244900 Sobic001G145000--Sobic004G244900 Sobic005G142800 Sobic005G142800 Sobic001G145000--Sobic005G142800 Sobic007G103100 Sobic007G103100 Sobic001G145000--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic001G145000--Sobic001G527800 Sobic010G123600 Sobic010G123600 Sobic001G145000--Sobic010G123600 Sobic002G316600 Sobic002G316600 Sobic001G145000--Sobic002G316600 Sobic003G168100 Sobic003G168100 Sobic009G129100--Sobic003G168100 Sobic005G167700 Sobic005G167700 Sobic009G129100--Sobic005G167700 Sobic003G067100 Sobic003G067100 Sobic009G129100--Sobic003G067100 Sobic010G126000 Sobic010G126000 Sobic009G129100--Sobic010G126000 Sobic003G234900 Sobic003G234900 Sobic009G129100--Sobic003G234900 Sobic003G120300 Sobic003G120300 Sobic009G129100--Sobic003G120300 Sobic001G275300 Sobic001G275300 Sobic009G129100--Sobic001G275300 Sobic004G185800 Sobic004G185800 Sobic009G129100--Sobic004G185800 Sobic009G132700 Sobic009G132700 Sobic009G129100--Sobic009G132700 Sobic002G347600 Sobic002G347600 Sobic006G038500--Sobic002G347600 Sobic006G038500--Sobic001G465700 Sobic004G120100 Sobic004G120100 Sobic006G038500--Sobic004G120100 Sobic001G126300 Sobic001G126300 Sobic006G038500--Sobic001G126300 Sobic003G141100 Sobic003G141100 Sobic006G038500--Sobic003G141100 Sobic006G128300 Sobic006G128300 Sobic006G038500--Sobic006G128300 Sobic001G516901 Sobic001G516901 Sobic006G038500--Sobic001G516901 Sobic003G232700 Sobic003G232700 Sobic006G038500--Sobic003G232700 Sobic003G160800 Sobic003G160800 Sobic006G038500--Sobic003G160800 Sobic010G255100 Sobic010G255100 Sobic006G256600--Sobic010G255100 Sobic003G085000 Sobic003G085000 Sobic006G256600--Sobic003G085000 Sobic001G291900 Sobic001G291900 Sobic006G256600--Sobic001G291900 Sobic006G210400 Sobic006G210400 Sobic006G256600--Sobic006G210400 Sobic002G297400 Sobic002G297400 Sobic006G256600--Sobic002G297400 Sobic006G055800 Sobic006G055800 Sobic006G256600--Sobic006G055800 Sobic005G002900 Sobic005G002900 Sobic006G256600--Sobic005G002900 Sobic001G309300 Sobic001G309300 Sobic006G256600--Sobic001G309300 Sobic004G065300 Sobic004G065300 Sobic006G256600--Sobic004G065300 Sobic001G465700--Sobic006G038500 Sobic010G043800 Sobic010G043800 Sobic001G465700--Sobic010G043800 Sobic005G111550 Sobic005G111550 Sobic001G465700--Sobic005G111550 Sobic003G442700 Sobic003G442700 Sobic001G465700--Sobic003G442700 Sobic008G001900 Sobic008G001900 Sobic001G465700--Sobic008G001900 Sobic004G294700 Sobic004G294700 Sobic001G465700--Sobic004G294700 Sobic001G530900 Sobic001G530900 Sobic001G465700--Sobic001G530900 Sobic004G298900 Sobic004G298900 Sobic001G465700--Sobic004G298900 Sobic006G031800 Sobic006G031800 Sobic001G465700--Sobic006G031800 Sobic001G124800 Sobic001G124800 Sobic004G054400--Sobic001G124800 Sobic004G054400--Sobic001G309300 Sobic003G387100 Sobic003G387100 Sobic004G054400--Sobic003G387100 Sobic001G032700 Sobic001G032700 Sobic004G054400--Sobic001G032700 Sobic004G054400--Sobic008G001900 Sobic004G054400--Sobic001G516901 Sobic001G512500 Sobic001G512500 Sobic004G054400--Sobic001G512500 Sobic004G336000 Sobic004G336000 Sobic004G054400--Sobic004G336000 Sobic006G010900 Sobic006G010900 Sobic004G054400--Sobic006G010900 Sobic004G359100 Sobic004G359100 Sobic002G431300--Sobic004G359100 Sobic002G431300--Sobic003G234900 Sobic004G163800 Sobic004G163800 Sobic002G431300--Sobic004G163800 Sobic002G043600 Sobic002G043600 Sobic002G431300--Sobic002G043600 Sobic002G431300--Sobic006G128300 Sobic006G186600 Sobic006G186600 Sobic002G431300--Sobic006G186600 Sobic002G431300--Sobic006G038500 Sobic002G343400 Sobic002G343400 Sobic002G431300--Sobic002G343400 Sobic002G431300--Sobic003G232700 Sobic004G263400--Sobic004G244900 Sobic004G263400--Sobic001G145000 Sobic004G263400--Sobic001G465700 Sobic001G288700 Sobic001G288700 Sobic004G263400--Sobic001G288700 Sobic004G026500 Sobic004G026500 Sobic004G263400--Sobic004G026500 Sobic002G321901 Sobic002G321901 Sobic004G263400--Sobic002G321901 Sobic003G340600 Sobic003G340600 Sobic004G263400--Sobic003G340600 Sobic004G263400--Sobic006G050000 Sobic001G300100 Sobic001G300100 Sobic004G263400--Sobic001G300100 Sobic003G193700--Sobic006G256600 Sobic004G307400 Sobic004G307400 Sobic003G193700--Sobic004G307400 Sobic004G016400 Sobic004G016400 Sobic003G193700--Sobic004G016400 Sobic003G193700--Sobic001G291900 Sobic010G023700 Sobic010G023700 Sobic003G193700--Sobic010G023700 Sobic001G295300 Sobic001G295300 Sobic003G193700--Sobic001G295300 Sobic003G193700--Sobic003G387100 Sobic003G193700--Sobic010G255100 Sobic005G184300 Sobic005G184300 Sobic003G193700--Sobic005G184300
Octagon: transcription factors


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