Gene annotation
Transcriptome id Sobic.003G193700.1
Synonym Sb03g025720, CARB
Functional annotation carbamoyl-phosphate synthase large chain, putative, expressed
UniProt C5XNR5
Pfam PF02142 PF02787 PF13535
Panther DB PTHR11405 PTHR11405:SF47
NCBI CDD -
KEGG Orthology K01955; carB, carbamoyl-phosphate synthase large subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G29900 : carbamoyl phosphate synthetase B
RAP-DB (Rice) LOC_Os01g38970.1 : carbamoyl-phosphate synthase large chain, putative, expressed
MaizeGDB (Corn) Zm00025a028436 , Zm00025a038378
Brachypodium KQK08367
Barley HORVU3Hr1G049610.2 , HORVU3Hr1G049610.1
Wheat TraesCS3B02G238600 , TraesCS3D02G209100 , TraesCS3A02G206600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G256600 expressed protein -
2 Sobic.004G307400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
3 Sobic.004G016400 CDP-alcohol phosphatidyltransferase, putative, expressed K00993: ethanolaminephosphotransferase
4 Sobic.001G291900 expressed protein -
5 Sobic.010G023700 Transketolase(PubMedID : 26186930)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
6 Sobic.001G295300 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
7 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
8 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
9 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
10 Sobic.006G050000 TBC domain containing protein, expressed -
11 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
12 Sobic.001G309300 expressed protein -
13 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
14 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
15 Sobic.001G447700 expressed protein -
16 Sobic.001G025400 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
17 Sobic.006G010900 expressed protein -
18 Sobic.005G149400 maf, putative, expressed K06287: septum formation protein
19 Sobic.007G029700 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
20 Sobic.001G391900 nifU, putative, expressed -


Gene co-expression network
sample Sobic003G193700 Sobic003G193700 Sobic006G256600 Sobic006G256600 Sobic003G193700--Sobic006G256600 Sobic004G307400 Sobic004G307400 Sobic003G193700--Sobic004G307400 Sobic004G016400 Sobic004G016400 Sobic003G193700--Sobic004G016400 Sobic001G291900 Sobic001G291900 Sobic003G193700--Sobic001G291900 Sobic010G023700 Sobic010G023700 Sobic003G193700--Sobic010G023700 Sobic001G295300 Sobic001G295300 Sobic003G193700--Sobic001G295300 Sobic003G387100 Sobic003G387100 Sobic003G193700--Sobic003G387100 Sobic010G255100 Sobic010G255100 Sobic003G193700--Sobic010G255100 Sobic005G184300 Sobic005G184300 Sobic003G193700--Sobic005G184300 Sobic006G256600--Sobic010G255100 Sobic003G085000 Sobic003G085000 Sobic006G256600--Sobic003G085000 Sobic006G256600--Sobic001G291900 Sobic006G210400 Sobic006G210400 Sobic006G256600--Sobic006G210400 Sobic002G297400 Sobic002G297400 Sobic006G256600--Sobic002G297400 Sobic006G055800 Sobic006G055800 Sobic006G256600--Sobic006G055800 Sobic005G002900 Sobic005G002900 Sobic006G256600--Sobic005G002900 Sobic001G309300 Sobic001G309300 Sobic006G256600--Sobic001G309300 Sobic004G065300 Sobic004G065300 Sobic006G256600--Sobic004G065300 Sobic005G149400 Sobic005G149400 Sobic004G307400--Sobic005G149400 Sobic004G343900 Sobic004G343900 Sobic004G307400--Sobic004G343900 Sobic009G030800 Sobic009G030800 Sobic004G307400--Sobic009G030800 Sobic004G307400--Sobic003G387100 Sobic004G307400--Sobic001G291900 SobicK031800 SobicK031800 Sobic004G307400--SobicK031800 Sobic004G307400--Sobic004G016400 Sobic004G336000 Sobic004G336000 Sobic004G307400--Sobic004G336000 Sobic009G030900 Sobic009G030900 Sobic004G307400--Sobic009G030900 Sobic004G016400--Sobic005G149400 Sobic001G025400 Sobic001G025400 Sobic004G016400--Sobic001G025400 Sobic004G016400--Sobic003G387100 Sobic004G016400--Sobic004G307400 Sobic004G016400--Sobic009G030900 Sobic004G016400--Sobic001G309300 Sobic009G059300 Sobic009G059300 Sobic004G016400--Sobic009G059300 Sobic004G016400--Sobic004G336000 Sobic004G016400--Sobic001G291900 Sobic001G368500 Sobic001G368500 Sobic001G291900--Sobic001G368500 Sobic001G104800 Sobic001G104800 Sobic001G291900--Sobic001G104800 Sobic001G291900--Sobic003G085000 Sobic001G291900--Sobic004G336000 Sobic001G291900--Sobic005G002900 Sobic001G291900--Sobic009G059300 Sobic001G291900--Sobic001G309300 Sobic001G291900--Sobic006G055800 Sobic006G106400 Sobic006G106400 Sobic001G291900--Sobic006G106400 Sobic002G051100 Sobic002G051100 Sobic010G023700--Sobic002G051100 Sobic009G063100 Sobic009G063100 Sobic010G023700--Sobic009G063100 Sobic001G129000 Sobic001G129000 Sobic010G023700--Sobic001G129000 Sobic004G272100 Sobic004G272100 Sobic010G023700--Sobic004G272100 Sobic004G125700 Sobic004G125700 Sobic010G023700--Sobic004G125700 Sobic001G102800 Sobic001G102800 Sobic010G023700--Sobic001G102800 Sobic007G140800 Sobic007G140800 Sobic010G023700--Sobic007G140800 Sobic002G277100 Sobic002G277100 Sobic010G023700--Sobic002G277100 Sobic001G020100 Sobic001G020100 Sobic010G023700--Sobic001G020100 Sobic001G295300--Sobic001G291900 Sobic003G008900 Sobic003G008900 Sobic001G295300--Sobic003G008900 Sobic001G308800 Sobic001G308800 Sobic001G295300--Sobic001G308800 Sobic001G447700 Sobic001G447700 Sobic001G295300--Sobic001G447700 Sobic001G006400 Sobic001G006400 Sobic001G295300--Sobic001G006400 Sobic007G208300 Sobic007G208300 Sobic001G295300--Sobic007G208300 Sobic003G022300 Sobic003G022300 Sobic001G295300--Sobic003G022300 Sobic004G227200 Sobic004G227200 Sobic001G295300--Sobic004G227200 Sobic001G295300--Sobic001G104800 Sobic003G387100--Sobic009G059300 Sobic004G336200 Sobic004G336200 Sobic003G387100--Sobic004G336200 Sobic008G073100 Sobic008G073100 Sobic003G387100--Sobic008G073100 Sobic006G207800 Sobic006G207800 Sobic003G387100--Sobic006G207800 Sobic003G160800 Sobic003G160800 Sobic003G387100--Sobic003G160800 Sobic005G110400 Sobic005G110400 Sobic003G387100--Sobic005G110400 Sobic004G012900 Sobic004G012900 Sobic003G387100--Sobic004G012900 Sobic003G412900 Sobic003G412900 Sobic003G387100--Sobic003G412900 Sobic010G035400 Sobic010G035400 Sobic003G387100--Sobic010G035400 Sobic010G255100--Sobic006G256600 Sobic010G255100--Sobic003G085000 Sobic001G382800 Sobic001G382800 Sobic010G255100--Sobic001G382800 Sobic010G255100--Sobic006G055800 Sobic005G014700 Sobic005G014700 Sobic010G255100--Sobic005G014700 Sobic003G128400 Sobic003G128400 Sobic010G255100--Sobic003G128400 Sobic010G255100--Sobic006G210400 Sobic001G308200 Sobic001G308200 Sobic010G255100--Sobic001G308200 Sobic001G102500 Sobic001G102500 Sobic010G255100--Sobic001G102500 Sobic001G099000 Sobic001G099000 Sobic005G184300--Sobic001G099000 Sobic007G101300 Sobic007G101300 Sobic005G184300--Sobic007G101300 Sobic005G184300--Sobic003G128400 Sobic002G158800 Sobic002G158800 Sobic005G184300--Sobic002G158800 Sobic001G003900 Sobic001G003900 Sobic005G184300--Sobic001G003900 Sobic005G184300--Sobic002G297400 Sobic002G081500 Sobic002G081500 Sobic005G184300--Sobic002G081500 Sobic005G184300--Sobic006G055800 Sobic005G110481 Sobic005G110481 Sobic005G184300--Sobic005G110481
Octagon: transcription factors


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