Gene annotation
| Transcriptome id | Sobic.001G025400.2,Sobic.001G025400.1 |
|---|---|
| Synonym | Sb01g002420 |
| Functional annotation | fumarylacetoacetase, putative, expressed |
| UniProt | C5WU08 , A0A1B6QH11 |
| Pfam | PF01557 |
| Panther DB | PTHR11820 |
| NCBI CDD | KOG1535; Predicted fumarylacetoacetate hydralase |
| KEGG Orthology | K01557; acylpyruvate hydrolase |
| Gene Ontology | GO:0008152; metabolic process GO:0003824catalytic activity |
Orthologs (automatic annotation)
| TAIR | AT4G15940 : Fumarylacetoacetate (FAA) hydrolase family |
|---|---|
| RAP-DB (Rice) | LOC_Os03g61330.3,LOC_Os03g61330.1 : fumarylacetoacetase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a007656 , Zm00025a008913 , Zm00025a009194 |
| Brachypodium | KQK14218 , KQK12346 , PNT74448 |
| Barley | HORVU5Hr1G115710.1 , HORVU4Hr1G013370.1 , HORVU4Hr1G013370.2 , HORVU4Hr1G013370.3 , HORVU4Hr1G013370.4 , HORVU4Hr1G013370.5 , HORVU4Hr1G013370.6 , HORVU4Hr1G013370.7 , HORVU4Hr1G013370.8 |
| Wheat | TraesCS4A02G366200 , TraesCS4A02G236400 , TraesCS4B02G078600 , TraesCS4D02G077400 , TraesCS5D02G506900 , TraesCS5B02G507100 |
| Populus | - |
JBrowse
| Sobic.001G025400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G110400 | pentatricopeptide repeat protein PPR986-12, putative, expressed | - |
| 2 | Sobic.002G401800 | bifunctional thioredoxin reductase/thioredoxin, putative, expressed | K00384: trxB, thioredoxin reductase (NADPH) |
| 3 | Sobic.004G336200 | OsClp6 - Putative Clp protease homologue, expressed | K01358: clpP, ATP-dependent Clp protease, protease subunit |
| 4 | Sobic.008G073100 | uncharacterized protein ycf45, putative, expressed | - |
| 5 | Sobic.001G368500 | ribosomal protein L6, putative, expressed | K02933: RP-L6, MRPL6, large subunit ribosomal protein L6 |
| 6 | Sobic.001G495200 | Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed | K00383: GSR, glutathione reductase (NADPH) |
| 7 | Sobic.003G387100 | membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed | K03969: phage shock protein A |
| 8 | Sobic.004G016400 | CDP-alcohol phosphatidyltransferase, putative, expressed | K00993: ethanolaminephosphotransferase |
| 9 | Sobic.001G309300 | expressed protein | - |
| 10 | Sobic.002G274200 | expressed protein | - |
| 11 | Sobic.006G132000 | glycine-rich protein, putative, expressed | - |
| 12 | Sobic.002G272100 | expressed protein | - |
| 13 | Sobic.004G336000 | chaperone protein dnaJ, putative, expressed | K03686: molecular chaperone DnaJ |
| 14 | Sobic.009G148500 | GTPase of unknown function domain containing protein, putative, expressed | - |
| 15 | Sobic.001G469933 | - | K02946: RP-S10, MRPS10, small subunit ribosomal protein S10 |
| 16 | Sobic.004G331700 | aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed | K00811: aspartate aminotransferase, chloroplastic |
| 17 | Sobic.005G002900 | OsGrx_S16 - glutaredoxin subgroup II, expressed | - |
| 18 | Sobic.004G012900 | expressed protein | - |
| 19 | Sobic.006G055800 | mttA/Hcf106 family protein, putative, expressed | - |
| 20 | Sobic.003G432500 | Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed | K03110: fused signal recognition particle receptor |
Gene co-expression network
Octagon: transcription factors
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