Gene annotation
Transcriptome id Sobic.004G018000.2
Synonym Sb04g001700
Functional annotation bifunctional protein folD, putative, expressed
UniProt A0A1Z5RKI8
Pfam PF00763 PF02882
Panther DB PTHR10025
NCBI CDD KOG0089; Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase
KEGG Orthology -
Gene Ontology GO:0009396; folic acid-containing compound biosynthetic process GO:0004488methylenetetrahydrofolate dehydrogenase (NADP+) activity GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G00620 : Amino acid dehydrogenase family protein
RAP-DB (Rice) LOC_Os02g02850.1 : bifunctional protein folD, putative, expressed
MaizeGDB (Corn) Zm00025a034912
Brachypodium -
Barley HORVU6Hr1G012700.1
Wheat TraesCS6D02G068400 , TraesCS6B02G094600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G178300 DNA-binding protein, putative, expressed -
2 Sobic.008G116000 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed K13832: aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
3 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
4 Sobic.001G486700 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
5 Sobic.001G003100 T-complex protein, putative, expressed -
6 Sobic.004G344000 expressed protein -
7 Sobic.001G462200 mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
8 Sobic.002G393700 expressed protein -
9 Sobic.001G116500 phosphoglucomutase, putative, expressed K01835: phosphoglucomutase
10 Sobic.001G435400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
11 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
12 Sobic.001G021000 nicotinate phosphoribosyltransferase family domain containing protein, expressed K00763: pncB, nicotinate phosphoribosyltransferase
13 Sobic.002G170200 zinc finger family protein, putative, expressed -
14 Sobic.002G383800 GTP-binding protein, putative, expressed K06944: uncharacterized protein
15 Sobic.002G317100 PPR repeat containing protein, expressed -
16 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
17 Sobic.006G093300 expressed protein K02519: infB, translation initiation factor IF-2
18 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
19 Sobic.007G208300 peptidase, putative, expressed K14677: aminoacylase
20 Sobic.002G279700 3-dehydroquinate synthase, putative, expressed K01735: 3-dehydroquinate synthase


Gene co-expression network
sample Sobic004G018000 Sobic004G018000 Sobic001G178300 Sobic001G178300 Sobic004G018000--Sobic001G178300 Sobic008G116000 Sobic008G116000 Sobic004G018000--Sobic008G116000 Sobic001G537500 Sobic001G537500 Sobic004G018000--Sobic001G537500 Sobic001G486700 Sobic001G486700 Sobic004G018000--Sobic001G486700 Sobic001G003100 Sobic001G003100 Sobic004G018000--Sobic001G003100 Sobic004G344000 Sobic004G344000 Sobic004G018000--Sobic004G344000 Sobic001G462200 Sobic001G462200 Sobic004G018000--Sobic001G462200 Sobic002G393700 Sobic002G393700 Sobic004G018000--Sobic002G393700 Sobic001G116500 Sobic001G116500 Sobic004G018000--Sobic001G116500 Sobic002G256700 Sobic002G256700 Sobic001G178300--Sobic002G256700 Sobic008G002300 Sobic008G002300 Sobic001G178300--Sobic008G002300 Sobic006G250300 Sobic006G250300 Sobic001G178300--Sobic006G250300 Sobic004G131800 Sobic004G131800 Sobic001G178300--Sobic004G131800 Sobic001G493700 Sobic001G493700 Sobic001G178300--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G178300--Sobic006G088200 Sobic001G275300 Sobic001G275300 Sobic001G178300--Sobic001G275300 Sobic006G056700 Sobic006G056700 Sobic001G178300--Sobic006G056700 Sobic001G178300--Sobic001G537500 Sobic002G389900 Sobic002G389900 Sobic008G116000--Sobic002G389900 Sobic001G082000 Sobic001G082000 Sobic008G116000--Sobic001G082000 Sobic008G116000--Sobic004G018000 Sobic002G279700 Sobic002G279700 Sobic008G116000--Sobic002G279700 Sobic004G121300 Sobic004G121300 Sobic008G116000--Sobic004G121300 Sobic003G218300 Sobic003G218300 Sobic008G116000--Sobic003G218300 Sobic003G186900 Sobic003G186900 Sobic008G116000--Sobic003G186900 Sobic006G196300 Sobic006G196300 Sobic008G116000--Sobic006G196300 Sobic004G252900 Sobic004G252900 Sobic008G116000--Sobic004G252900 Sobic006G073200 Sobic006G073200 Sobic001G537500--Sobic006G073200 Sobic004G167200 Sobic004G167200 Sobic001G537500--Sobic004G167200 Sobic006G002800 Sobic006G002800 Sobic001G537500--Sobic006G002800 Sobic004G275600 Sobic004G275600 Sobic001G537500--Sobic004G275600 Sobic004G257100 Sobic004G257100 Sobic001G537500--Sobic004G257100 Sobic007G145400 Sobic007G145400 Sobic001G537500--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G537500--Sobic005G115500 Sobic001G537500--Sobic001G178300 Sobic002G246700 Sobic002G246700 Sobic001G537500--Sobic002G246700 Sobic009G124000 Sobic009G124000 Sobic001G486700--Sobic009G124000 Sobic001G486700--Sobic001G462200 Sobic001G486700--Sobic004G018000 Sobic003G378400 Sobic003G378400 Sobic001G486700--Sobic003G378400 Sobic002G301200 Sobic002G301200 Sobic001G486700--Sobic002G301200 Sobic001G486700--Sobic004G275600 Sobic001G468600 Sobic001G468600 Sobic001G486700--Sobic001G468600 Sobic009G072000 Sobic009G072000 Sobic001G486700--Sobic009G072000 Sobic009G045900 Sobic009G045900 Sobic001G486700--Sobic009G045900 Sobic003G083400 Sobic003G083400 Sobic001G003100--Sobic003G083400 Sobic004G359100 Sobic004G359100 Sobic001G003100--Sobic004G359100 Sobic002G431300 Sobic002G431300 Sobic001G003100--Sobic002G431300 Sobic001G257700 Sobic001G257700 Sobic001G003100--Sobic001G257700 Sobic004G336000 Sobic004G336000 Sobic001G003100--Sobic004G336000 Sobic006G261700 Sobic006G261700 Sobic001G003100--Sobic006G261700 Sobic002G383800 Sobic002G383800 Sobic001G003100--Sobic002G383800 Sobic006G050000 Sobic006G050000 Sobic001G003100--Sobic006G050000 Sobic001G003100--Sobic004G018000 Sobic005G026000 Sobic005G026000 Sobic004G344000--Sobic005G026000 Sobic004G344000--Sobic001G275300 Sobic010G183300 Sobic010G183300 Sobic004G344000--Sobic010G183300 Sobic003G310300 Sobic003G310300 Sobic004G344000--Sobic003G310300 Sobic006G093300 Sobic006G093300 Sobic004G344000--Sobic006G093300 Sobic003G107500 Sobic003G107500 Sobic004G344000--Sobic003G107500 Sobic006G039400 Sobic006G039400 Sobic004G344000--Sobic006G039400 Sobic004G344000--Sobic001G178300 Sobic001G153300 Sobic001G153300 Sobic004G344000--Sobic001G153300 Sobic001G462200--Sobic001G486700 Sobic001G462200--Sobic003G378400 Sobic001G462200--Sobic009G124000 Sobic001G462200--Sobic004G018000 Sobic004G016400 Sobic004G016400 Sobic001G462200--Sobic004G016400 Sobic007G208300 Sobic007G208300 Sobic001G462200--Sobic007G208300 Sobic001G462200--Sobic001G116500 Sobic003G193700 Sobic003G193700 Sobic001G462200--Sobic003G193700 Sobic008G004300 Sobic008G004300 Sobic001G462200--Sobic008G004300 Sobic002G170200 Sobic002G170200 Sobic002G393700--Sobic002G170200 Sobic001G435400 Sobic001G435400 Sobic002G393700--Sobic001G435400 Sobic002G393700--Sobic006G261700 Sobic007G079400 Sobic007G079400 Sobic002G393700--Sobic007G079400 Sobic006G127600 Sobic006G127600 Sobic002G393700--Sobic006G127600 Sobic003G176000 Sobic003G176000 Sobic002G393700--Sobic003G176000 Sobic001G009600 Sobic001G009600 Sobic002G393700--Sobic001G009600 Sobic002G393700--Sobic004G018000 Sobic001G412100 Sobic001G412100 Sobic002G393700--Sobic001G412100 Sobic004G094700 Sobic004G094700 Sobic001G116500--Sobic004G094700 Sobic001G537100 Sobic001G537100 Sobic001G116500--Sobic001G537100 Sobic005G111700 Sobic005G111700 Sobic001G116500--Sobic005G111700 Sobic001G116500--Sobic006G039400 Sobic001G178100 Sobic001G178100 Sobic001G116500--Sobic001G178100 Sobic003G279200 Sobic003G279200 Sobic001G116500--Sobic003G279200 Sobic001G116500--Sobic004G018000 Sobic001G116500--Sobic001G435400 Sobic001G116500--Sobic001G462200
Octagon: transcription factors


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