Gene annotation
Transcriptome id Sobic.002G170200.1
Synonym Sb02g021790
Functional annotation zinc finger family protein, putative, expressed
UniProt C5X9S8
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF89
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G32600 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g15430.4 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a046496 , Zm00025a013744
Brachypodium KQJ89842 , KQK07220 , KQK07221 , KQK07222
Barley HORVU5Hr1G055970.1 , HORVU5Hr1G055970.2
Wheat TraesCS5A02G183200 , TraesCS5D02G188300 , TraesCS5B02G181400 , TraesCS5B02G181400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G131800 sirohydrochlorin ferrochelatase, putative, expressed -
2 Sobic.001G283600 NTMC2Type1.2 protein, putative, expressed -
3 Sobic.003G176000 lipase family protein, putative, expressed -
4 Sobic.005G198000 armadillo/beta-catenin-like repeat family protein, expressed -
5 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
6 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
7 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
8 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -
9 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
10 Sobic.004G198600 cyclin G-associated kinase, putative, expressed K08853: AP2-associated kinase
11 Sobic.003G296900 expressed protein -
12 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
13 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
14 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
15 Sobic.008G048300 transcription elongation factor protein, putative, expressed -
16 Sobic.010G068700 transporter family protein, putative, expressed K15281: solute carrier family 35
17 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
18 Sobic.002G424900 MAG2, putative, expressed -
19 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
20 Sobic.004G240400 tRNA synthetase, putative, expressed -


Gene co-expression network
sample Sobic002G170200 Sobic002G170200 Sobic004G131800 Sobic004G131800 Sobic002G170200--Sobic004G131800 Sobic001G283600 Sobic001G283600 Sobic002G170200--Sobic001G283600 Sobic003G176000 Sobic003G176000 Sobic002G170200--Sobic003G176000 Sobic005G198000 Sobic005G198000 Sobic002G170200--Sobic005G198000 Sobic006G056700 Sobic006G056700 Sobic002G170200--Sobic006G056700 Sobic006G127600 Sobic006G127600 Sobic002G170200--Sobic006G127600 Sobic006G039400 Sobic006G039400 Sobic002G170200--Sobic006G039400 Sobic007G162100 Sobic007G162100 Sobic002G170200--Sobic007G162100 Sobic006G261400 Sobic006G261400 Sobic002G170200--Sobic006G261400 Sobic004G131800--Sobic003G176000 Sobic002G211800 Sobic002G211800 Sobic004G131800--Sobic002G211800 Sobic004G131800--Sobic002G170200 Sobic004G131800--Sobic006G127600 Sobic010G032900 Sobic010G032900 Sobic004G131800--Sobic010G032900 Sobic002G344000 Sobic002G344000 Sobic004G131800--Sobic002G344000 Sobic004G131800--Sobic006G056700 Sobic001G178300 Sobic001G178300 Sobic004G131800--Sobic001G178300 Sobic002G294800 Sobic002G294800 Sobic004G131800--Sobic002G294800 Sobic001G283600--Sobic007G162100 Sobic010G034100 Sobic010G034100 Sobic001G283600--Sobic010G034100 Sobic008G048300 Sobic008G048300 Sobic001G283600--Sobic008G048300 Sobic001G283600--Sobic002G170200 Sobic001G283600--Sobic006G127600 Sobic001G283600--Sobic006G039400 Sobic008G033500 Sobic008G033500 Sobic001G283600--Sobic008G033500 Sobic006G093300 Sobic006G093300 Sobic001G283600--Sobic006G093300 Sobic008G082500 Sobic008G082500 Sobic001G283600--Sobic008G082500 Sobic003G176000--Sobic004G131800 Sobic003G176000--Sobic002G344000 Sobic003G176000--Sobic002G211800 Sobic003G176000--Sobic002G170200 Sobic003G176000--Sobic010G032900 Sobic003G253600 Sobic003G253600 Sobic003G176000--Sobic003G253600 Sobic002G325300 Sobic002G325300 Sobic003G176000--Sobic002G325300 Sobic003G176000--Sobic002G294800 Sobic005G059800 Sobic005G059800 Sobic003G176000--Sobic005G059800 Sobic005G198000--Sobic002G170200 Sobic004G355700 Sobic004G355700 Sobic005G198000--Sobic004G355700 Sobic002G408200 Sobic002G408200 Sobic005G198000--Sobic002G408200 Sobic001G085600 Sobic001G085600 Sobic005G198000--Sobic001G085600 Sobic008G168300 Sobic008G168300 Sobic005G198000--Sobic008G168300 Sobic002G121600 Sobic002G121600 Sobic005G198000--Sobic002G121600 Sobic005G198000--Sobic001G283600 Sobic010G243900 Sobic010G243900 Sobic005G198000--Sobic010G243900 Sobic005G198000--Sobic010G032900 Sobic006G096900 Sobic006G096900 Sobic006G056700--Sobic006G096900 Sobic001G456300 Sobic001G456300 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic001G275300 Sobic001G275300 Sobic006G056700--Sobic001G275300 Sobic008G063300 Sobic008G063300 Sobic006G056700--Sobic008G063300 Sobic006G056700--Sobic002G170200 Sobic006G056700--Sobic004G131800 Sobic007G159900 Sobic007G159900 Sobic006G056700--Sobic007G159900 Sobic003G360400 Sobic003G360400 Sobic006G056700--Sobic003G360400 Sobic006G127600--Sobic007G162100 Sobic006G127600--Sobic006G261400 Sobic008G157200 Sobic008G157200 Sobic006G127600--Sobic008G157200 Sobic009G256900 Sobic009G256900 Sobic006G127600--Sobic009G256900 Sobic010G000800 Sobic010G000800 Sobic006G127600--Sobic010G000800 Sobic001G251100 Sobic001G251100 Sobic006G127600--Sobic001G251100 Sobic001G333100 Sobic001G333100 Sobic006G127600--Sobic001G333100 Sobic003G379200 Sobic003G379200 Sobic006G127600--Sobic003G379200 Sobic006G131000 Sobic006G131000 Sobic006G127600--Sobic006G131000 Sobic006G039400--Sobic006G093300 Sobic001G405600 Sobic001G405600 Sobic006G039400--Sobic001G405600 Sobic003G296900 Sobic003G296900 Sobic006G039400--Sobic003G296900 Sobic001G237600 Sobic001G237600 Sobic006G039400--Sobic001G237600 Sobic003G182300 Sobic003G182300 Sobic006G039400--Sobic003G182300 Sobic010G230600 Sobic010G230600 Sobic006G039400--Sobic010G230600 Sobic006G039400--Sobic007G162100 Sobic007G087000 Sobic007G087000 Sobic006G039400--Sobic007G087000 Sobic006G039400--Sobic001G283600 Sobic007G162100--Sobic006G127600 Sobic007G162100--Sobic001G283600 Sobic009G084900 Sobic009G084900 Sobic007G162100--Sobic009G084900 Sobic001G435400 Sobic001G435400 Sobic007G162100--Sobic001G435400 Sobic003G189600 Sobic003G189600 Sobic007G162100--Sobic003G189600 Sobic010G020400 Sobic010G020400 Sobic007G162100--Sobic010G020400 Sobic003G264100 Sobic003G264100 Sobic007G162100--Sobic003G264100 Sobic007G132100 Sobic007G132100 Sobic007G162100--Sobic007G132100 Sobic009G192300 Sobic009G192300 Sobic007G162100--Sobic009G192300 Sobic006G261400--Sobic003G379200 Sobic006G261400--Sobic006G127600 Sobic006G267600 Sobic006G267600 Sobic006G261400--Sobic006G267600 Sobic003G104000 Sobic003G104000 Sobic006G261400--Sobic003G104000 Sobic006G261400--Sobic010G000800 Sobic002G048700 Sobic002G048700 Sobic006G261400--Sobic002G048700 Sobic001G051700 Sobic001G051700 Sobic006G261400--Sobic001G051700 Sobic004G131300 Sobic004G131300 Sobic006G261400--Sobic004G131300 Sobic006G261400--Sobic003G296900
Octagon: transcription factors


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