Gene annotation
Transcriptome id Sobic.002G424900.1
Synonym Sb02g043560
Functional annotation MAG2, putative, expressed
UniProt C5X6B2
Pfam PF04437
Panther DB PTHR13520 PTHR13520:SF0
NCBI CDD KOG2218; ER to golgi transport protein/RAD50-interacting protein 1
KEGG Orthology -
Gene Ontology GO:0005783; endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT1G08400 : RINT-1 / TIP-1 family
RAP-DB (Rice) LOC_Os07g48720.1 : MAG2, putative, expressed
MaizeGDB (Corn) Zm00025a015477
Brachypodium KQK14562
Barley HORVU2Hr1G016800.3 , HORVU2Hr1G016800.2 , HORVU2Hr1G016800.1 , HORVU2Hr1G016800.7 , HORVU2Hr1G016800.6 , HORVU2Hr1G016800.5 , HORVU2Hr1G016800.4 , HORVU2Hr1G016800.9 , HORVU2Hr1G016800.8 , HORVU2Hr1G016800.12 , HORVU2Hr1G016800.11 , HORVU2Hr1G016800.10
Wheat TraesCS2B02G114800 , TraesCS2D02G098100 , TraesCS2D02G098100 , TraesCS2A02G098600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
2 Sobic.002G296100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
3 Sobic.002G170200 zinc finger family protein, putative, expressed -
4 Sobic.002G425500 ATPOT1, putative, expressed -
5 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
6 Sobic.002G347600 pentatricopeptide containing protein, putative, expressed -
7 Sobic.001G155400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
8 Sobic.001G002600 expressed protein -
9 Sobic.004G235300 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
10 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
11 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
12 Sobic.001G540800 DNA binding protein, putative, expressed -
13 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
14 Sobic.001G518100 DNA-binding bromodomain-containing protein, putative, expressed K11723: bromodomain-containing protein 7
15 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
16 Sobic.005G198000 armadillo/beta-catenin-like repeat family protein, expressed -
17 Sobic.004G137801 - -
18 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
19 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
20 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G424900 Sobic002G424900 Sobic003G120300 Sobic003G120300 Sobic002G424900--Sobic003G120300 Sobic002G296100 Sobic002G296100 Sobic002G424900--Sobic002G296100 Sobic002G170200 Sobic002G170200 Sobic002G424900--Sobic002G170200 Sobic002G425500 Sobic002G425500 Sobic002G424900--Sobic002G425500 Sobic010G145800 Sobic010G145800 Sobic002G424900--Sobic010G145800 Sobic002G347600 Sobic002G347600 Sobic002G424900--Sobic002G347600 Sobic001G155400 Sobic001G155400 Sobic002G424900--Sobic001G155400 Sobic001G002600 Sobic001G002600 Sobic002G424900--Sobic001G002600 Sobic004G235300 Sobic004G235300 Sobic002G424900--Sobic004G235300 Sobic003G120300--Sobic002G424900 Sobic009G129100 Sobic009G129100 Sobic003G120300--Sobic009G129100 Sobic006G216100 Sobic006G216100 Sobic003G120300--Sobic006G216100 Sobic001G455600 Sobic001G455600 Sobic003G120300--Sobic001G455600 Sobic010G034100 Sobic010G034100 Sobic003G120300--Sobic010G034100 Sobic009G107300 Sobic009G107300 Sobic003G120300--Sobic009G107300 Sobic007G017800 Sobic007G017800 Sobic003G120300--Sobic007G017800 Sobic002G042800 Sobic002G042800 Sobic003G120300--Sobic002G042800 Sobic003G120300--Sobic002G425500 Sobic002G042500 Sobic002G042500 Sobic002G296100--Sobic002G042500 Sobic001G037500 Sobic001G037500 Sobic002G296100--Sobic001G037500 Sobic002G296100--Sobic002G347600 Sobic004G020800 Sobic004G020800 Sobic002G296100--Sobic004G020800 Sobic003G434700 Sobic003G434700 Sobic002G296100--Sobic003G434700 Sobic004G206200 Sobic004G206200 Sobic002G296100--Sobic004G206200 Sobic006G128300 Sobic006G128300 Sobic002G296100--Sobic006G128300 Sobic002G081500 Sobic002G081500 Sobic002G296100--Sobic002G081500 Sobic001G022500 Sobic001G022500 Sobic002G296100--Sobic001G022500 Sobic004G131800 Sobic004G131800 Sobic002G170200--Sobic004G131800 Sobic001G283600 Sobic001G283600 Sobic002G170200--Sobic001G283600 Sobic003G176000 Sobic003G176000 Sobic002G170200--Sobic003G176000 Sobic005G198000 Sobic005G198000 Sobic002G170200--Sobic005G198000 Sobic006G056700 Sobic006G056700 Sobic002G170200--Sobic006G056700 Sobic006G127600 Sobic006G127600 Sobic002G170200--Sobic006G127600 Sobic006G039400 Sobic006G039400 Sobic002G170200--Sobic006G039400 Sobic007G162100 Sobic007G162100 Sobic002G170200--Sobic007G162100 Sobic006G261400 Sobic006G261400 Sobic002G170200--Sobic006G261400 Sobic001G020000 Sobic001G020000 Sobic002G425500--Sobic001G020000 Sobic002G425500--Sobic001G155400 Sobic003G188400 Sobic003G188400 Sobic002G425500--Sobic003G188400 Sobic004G107200 Sobic004G107200 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic004G185800 Sobic004G185800 Sobic002G425500--Sobic004G185800 Sobic001G227200 Sobic001G227200 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic004G155600 Sobic004G155600 Sobic002G425500--Sobic004G155600 Sobic007G203200 Sobic007G203200 Sobic010G145800--Sobic007G203200 Sobic010G140400 Sobic010G140400 Sobic010G145800--Sobic010G140400 Sobic010G145800--Sobic001G002600 Sobic010G145800--Sobic001G227200 Sobic009G260500 Sobic009G260500 Sobic010G145800--Sobic009G260500 Sobic007G011600 Sobic007G011600 Sobic010G145800--Sobic007G011600 Sobic001G083400 Sobic001G083400 Sobic010G145800--Sobic001G083400 Sobic010G237900 Sobic010G237900 Sobic010G145800--Sobic010G237900 Sobic001G219600 Sobic001G219600 Sobic010G145800--Sobic001G219600 Sobic006G038500 Sobic006G038500 Sobic002G347600--Sobic006G038500 Sobic003G301300 Sobic003G301300 Sobic002G347600--Sobic003G301300 Sobic004G336200 Sobic004G336200 Sobic002G347600--Sobic004G336200 Sobic008G091400 Sobic008G091400 Sobic002G347600--Sobic008G091400 Sobic002G347600--Sobic006G128300 Sobic003G247400 Sobic003G247400 Sobic002G347600--Sobic003G247400 Sobic003G141100 Sobic003G141100 Sobic002G347600--Sobic003G141100 Sobic004G328400 Sobic004G328400 Sobic002G347600--Sobic004G328400 Sobic009G121000 Sobic009G121000 Sobic002G347600--Sobic009G121000 Sobic001G155400--Sobic002G425500 Sobic001G035200 Sobic001G035200 Sobic001G155400--Sobic001G035200 Sobic003G413100 Sobic003G413100 Sobic001G155400--Sobic003G413100 Sobic010G096000 Sobic010G096000 Sobic001G155400--Sobic010G096000 Sobic002G063900 Sobic002G063900 Sobic001G155400--Sobic002G063900 Sobic001G155400--Sobic010G145800 Sobic001G155400--Sobic010G140400 Sobic008G173100 Sobic008G173100 Sobic001G155400--Sobic008G173100 Sobic001G155400--Sobic001G020000 Sobic001G002600--Sobic010G237900 Sobic004G129300 Sobic004G129300 Sobic001G002600--Sobic004G129300 Sobic001G002600--Sobic010G145800 Sobic001G002600--Sobic004G155600 Sobic006G118700 Sobic006G118700 Sobic001G002600--Sobic006G118700 Sobic007G191700 Sobic007G191700 Sobic001G002600--Sobic007G191700 Sobic006G096900 Sobic006G096900 Sobic001G002600--Sobic006G096900 Sobic006G014100 Sobic006G014100 Sobic001G002600--Sobic006G014100 Sobic003G133900 Sobic003G133900 Sobic001G002600--Sobic003G133900 Sobic004G235300--Sobic004G155600 Sobic004G235300--Sobic002G425500 Sobic001G461400 Sobic001G461400 Sobic004G235300--Sobic001G461400 Sobic004G235300--Sobic010G237900 Sobic006G080400 Sobic006G080400 Sobic004G235300--Sobic006G080400 Sobic004G235300--Sobic001G002600 Sobic001G501800 Sobic001G501800 Sobic004G235300--Sobic001G501800 Sobic001G151100 Sobic001G151100 Sobic004G235300--Sobic001G151100 Sobic001G275300 Sobic001G275300 Sobic004G235300--Sobic001G275300
Octagon: transcription factors


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