Gene annotation
Transcriptome id Sobic.008G116000.4
Synonym EMB3004, Sb08g016970, MEE32
Functional annotation bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed
UniProt A0A1B6PD58
Pfam PF01488 PF08501 PF01487
Panther DB PTHR21089 PTHR21089:SF1
NCBI CDD KOG0692; Pentafunctional AROM protein
KEGG Orthology K13832; aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
Gene Ontology GO:0004764; shikimate 3-dehydrogenase (NADP+) activity GO:00038553-dehydroquinate dehydratase activity


Orthologs (automatic annotation)
TAIR AT3G06350 : dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative
RAP-DB (Rice) LOC_Os12g34874.3 : bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a025545 , Zm00025a024584 , Zm00025a054370
Brachypodium KQJ86492
Barley HORVU5Hr1G026170.20 , HORVU0Hr1G035760.3 , HORVU0Hr1G035760.2 , HORVU0Hr1G035760.1 , HORVU0Hr1G035760.4 , HORVU5Hr1G026170.17 , HORVU5Hr1G026170.16 , HORVU5Hr1G026170.15 , HORVU5Hr1G026170.14 , HORVU5Hr1G026170.13 , HORVU5Hr1G026170.12 , HORVU5Hr1G026170.11 , HORVU5Hr1G026170.10 , HORVU5Hr1G026170.19 , HORVU5Hr1G026170.18 , HORVU5Hr1G026170.9 , HORVU5Hr1G026170.8 , HORVU5Hr1G026170.7 , HORVU5Hr1G026170.6 , HORVU5Hr1G026170.5 , HORVU5Hr1G026170.4 , HORVU5Hr1G026170.3 , HORVU5Hr1G026170.2 , HORVU5Hr1G026170.1
Wheat TraesCS5A02G096500 , TraesCS5A02G096500 , TraesCS5A02G096500 , TraesCS5A02G096500 , TraesCS5D02G109200 , TraesCS5D02G109200 , TraesCS5B02G102400 , TraesCS5B02G102400 , TraesCS5B02G102400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G389900 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed -
2 Sobic.001G082000 zinc finger family protein, putative, expressed K06874: zinc finger protein
3 Sobic.004G018000 bifunctional protein folD, putative, expressed -
4 Sobic.002G279700 3-dehydroquinate synthase, putative, expressed K01735: 3-dehydroquinate synthase
5 Sobic.004G121300 ATP11 protein, expressed K07555: ATPeAF1, ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
6 Sobic.003G218300 C-5 cytosine-specific DNA methylase, putative, expressed K15336: TRDMT1, tRNA (cytosine38-C5)-methyltransferase
7 Sobic.003G186900 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
8 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
9 Sobic.004G252900 transcription factor IIA large subunit, putative, expressed K03122: TFIIA1, GTF2A1, transcription initiation factor TFIIA large subunit
10 Sobic.005G199400 glutathione synthetase, chloroplast precursor, putative, expressed K01920: glutathione synthase
11 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.001G003100 T-complex protein, putative, expressed -
13 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
14 Sobic.001G178300 DNA-binding protein, putative, expressed -
15 Sobic.009G162600 OsFtsH8 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
16 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
17 Sobic.009G243100 pex14, putative, expressed -
18 Sobic.001G019800 FAD binding domain containing protein, expressed K06126: ubiquinone biosynthesis monooxygenase Coq6
19 Sobic.006G250300 pelota, putative, expressed K06965: PELO, DOM34, protein pelota
20 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin


Gene co-expression network
sample Sobic008G116000 Sobic008G116000 Sobic002G389900 Sobic002G389900 Sobic008G116000--Sobic002G389900 Sobic001G082000 Sobic001G082000 Sobic008G116000--Sobic001G082000 Sobic004G018000 Sobic004G018000 Sobic008G116000--Sobic004G018000 Sobic002G279700 Sobic002G279700 Sobic008G116000--Sobic002G279700 Sobic004G121300 Sobic004G121300 Sobic008G116000--Sobic004G121300 Sobic003G218300 Sobic003G218300 Sobic008G116000--Sobic003G218300 Sobic003G186900 Sobic003G186900 Sobic008G116000--Sobic003G186900 Sobic006G196300 Sobic006G196300 Sobic008G116000--Sobic006G196300 Sobic004G252900 Sobic004G252900 Sobic008G116000--Sobic004G252900 Sobic002G389900--Sobic008G116000 Sobic002G311100 Sobic002G311100 Sobic002G389900--Sobic002G311100 Sobic002G389900--Sobic006G196300 Sobic002G389900--Sobic004G252900 Sobic003G293300 Sobic003G293300 Sobic002G389900--Sobic003G293300 Sobic002G263600 Sobic002G263600 Sobic002G389900--Sobic002G263600 Sobic008G054000 Sobic008G054000 Sobic002G389900--Sobic008G054000 Sobic001G251100 Sobic001G251100 Sobic002G389900--Sobic001G251100 Sobic001G333100 Sobic001G333100 Sobic002G389900--Sobic001G333100 Sobic001G082000--Sobic008G116000 Sobic001G082000--Sobic002G389900 Sobic004G115350 Sobic004G115350 Sobic001G082000--Sobic004G115350 Sobic003G099100 Sobic003G099100 Sobic001G082000--Sobic003G099100 Sobic001G082000--Sobic002G311100 Sobic004G310500 Sobic004G310500 Sobic001G082000--Sobic004G310500 Sobic008G089900 Sobic008G089900 Sobic001G082000--Sobic008G089900 Sobic002G166900 Sobic002G166900 Sobic001G082000--Sobic002G166900 Sobic001G019800 Sobic001G019800 Sobic001G082000--Sobic001G019800 Sobic001G178300 Sobic001G178300 Sobic004G018000--Sobic001G178300 Sobic004G018000--Sobic008G116000 Sobic001G537500 Sobic001G537500 Sobic004G018000--Sobic001G537500 Sobic001G486700 Sobic001G486700 Sobic004G018000--Sobic001G486700 Sobic001G003100 Sobic001G003100 Sobic004G018000--Sobic001G003100 Sobic004G344000 Sobic004G344000 Sobic004G018000--Sobic004G344000 Sobic001G462200 Sobic001G462200 Sobic004G018000--Sobic001G462200 Sobic002G393700 Sobic002G393700 Sobic004G018000--Sobic002G393700 Sobic001G116500 Sobic001G116500 Sobic004G018000--Sobic001G116500 Sobic002G128900 Sobic002G128900 Sobic002G279700--Sobic002G128900 Sobic006G261700 Sobic006G261700 Sobic002G279700--Sobic006G261700 Sobic001G295300 Sobic001G295300 Sobic002G279700--Sobic001G295300 Sobic002G200900 Sobic002G200900 Sobic002G279700--Sobic002G200900 Sobic002G233700 Sobic002G233700 Sobic002G279700--Sobic002G233700 Sobic008G188600 Sobic008G188600 Sobic002G279700--Sobic008G188600 Sobic001G020100 Sobic001G020100 Sobic002G279700--Sobic001G020100 Sobic008G006200 Sobic008G006200 Sobic002G279700--Sobic008G006200 Sobic004G307400 Sobic004G307400 Sobic002G279700--Sobic004G307400 Sobic001G014800 Sobic001G014800 Sobic004G121300--Sobic001G014800 Sobic010G049100 Sobic010G049100 Sobic004G121300--Sobic010G049100 Sobic004G121300--Sobic001G333100 Sobic001G434200 Sobic001G434200 Sobic004G121300--Sobic001G434200 Sobic008G033500 Sobic008G033500 Sobic004G121300--Sobic008G033500 Sobic002G131500 Sobic002G131500 Sobic004G121300--Sobic002G131500 Sobic006G274800 Sobic006G274800 Sobic004G121300--Sobic006G274800 Sobic005G111900 Sobic005G111900 Sobic004G121300--Sobic005G111900 Sobic010G131900 Sobic010G131900 Sobic004G121300--Sobic010G131900 Sobic003G218300--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic003G218300--Sobic007G054800 Sobic003G104000 Sobic003G104000 Sobic003G218300--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic003G218300--Sobic002G256700 Sobic002G020700 Sobic002G020700 Sobic003G218300--Sobic002G020700 Sobic003G218300--Sobic001G251100 Sobic003G046300 Sobic003G046300 Sobic003G218300--Sobic003G046300 Sobic003G221400 Sobic003G221400 Sobic003G218300--Sobic003G221400 Sobic002G142900 Sobic002G142900 Sobic003G218300--Sobic002G142900 Sobic003G166200 Sobic003G166200 Sobic003G186900--Sobic003G166200 Sobic003G264800 Sobic003G264800 Sobic003G186900--Sobic003G264800 Sobic005G106600 Sobic005G106600 Sobic003G186900--Sobic005G106600 Sobic006G219600 Sobic006G219600 Sobic003G186900--Sobic006G219600 Sobic002G072400 Sobic002G072400 Sobic003G186900--Sobic002G072400 Sobic004G337400 Sobic004G337400 Sobic003G186900--Sobic004G337400 Sobic010G171600 Sobic010G171600 Sobic003G186900--Sobic010G171600 Sobic001G333800 Sobic001G333800 Sobic003G186900--Sobic001G333800 Sobic001G207800 Sobic001G207800 Sobic003G186900--Sobic001G207800 Sobic003G264100 Sobic003G264100 Sobic006G196300--Sobic003G264100 Sobic002G405400 Sobic002G405400 Sobic006G196300--Sobic002G405400 Sobic001G455800 Sobic001G455800 Sobic006G196300--Sobic001G455800 Sobic006G196300--Sobic002G142900 Sobic010G020400 Sobic010G020400 Sobic006G196300--Sobic010G020400 Sobic006G196300--Sobic001G333100 Sobic001G227400 Sobic001G227400 Sobic006G196300--Sobic001G227400 Sobic004G241900 Sobic004G241900 Sobic006G196300--Sobic004G241900 Sobic002G303600 Sobic002G303600 Sobic006G196300--Sobic002G303600 Sobic004G252900--Sobic006G196300 Sobic002G185900 Sobic002G185900 Sobic004G252900--Sobic002G185900 Sobic004G252900--Sobic003G264100 Sobic002G117400 Sobic002G117400 Sobic004G252900--Sobic002G117400 Sobic003G379200 Sobic003G379200 Sobic004G252900--Sobic003G379200 Sobic010G275400 Sobic010G275400 Sobic004G252900--Sobic010G275400 Sobic006G039400 Sobic006G039400 Sobic004G252900--Sobic006G039400 Sobic004G028100 Sobic004G028100 Sobic004G252900--Sobic004G028100 Sobic004G252900--Sobic001G019800
Octagon: transcription factors


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