Gene annotation
Transcriptome id Sobic.001G178300.1,Sobic.001G178300.3,Sobic.001G178300.2
Synonym Sb01g015520
Functional annotation DNA-binding protein, putative, expressed
UniProt C6JRL0 , C5WTD0 , A0A1B6QJI8
Pfam PF13245
Panther DB PTHR10887 PTHR10887:SF366
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G03270 : DNA-binding protein, putative
RAP-DB (Rice) LOC_Os03g38990.1 : DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a007134
Brachypodium KQK14313 , KQK14312
Barley HORVU5Hr1G106390.2 , HORVU5Hr1G106390.3 , HORVU5Hr1G106390.6 , HORVU5Hr1G106390.7 , HORVU5Hr1G106390.4 , HORVU5Hr1G106390.5
Wheat TraesCS5A02G442300 , TraesCS5D02G449700 , TraesCS5B02G446400
Populus PNT29899


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
2 Sobic.008G002300 ATSIZ1/SIZ1, putative, expressed -
3 Sobic.006G250300 pelota, putative, expressed K06965: PELO, DOM34, protein pelota
4 Sobic.004G131800 sirohydrochlorin ferrochelatase, putative, expressed -
5 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
6 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
7 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
8 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
9 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
10 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
11 Sobic.004G018000 bifunctional protein folD, putative, expressed -
12 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
13 Sobic.001G430400 Ser/Thr protein phosphatase family protein, putative, expressed -
14 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
15 Sobic.010G102600 pentatricopeptide, putative, expressed -
16 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
17 Sobic.002G317100 PPR repeat containing protein, expressed -
18 Sobic.001G244300 GA19388-PA, putative, expressed K10768: alkylated DNA repair protein alkB homolog 6
19 Sobic.001G277900 expressed protein -
20 Sobic.004G344000 expressed protein -


Gene co-expression network
sample Sobic001G178300 Sobic001G178300 Sobic002G256700 Sobic002G256700 Sobic001G178300--Sobic002G256700 Sobic008G002300 Sobic008G002300 Sobic001G178300--Sobic008G002300 Sobic006G250300 Sobic006G250300 Sobic001G178300--Sobic006G250300 Sobic004G131800 Sobic004G131800 Sobic001G178300--Sobic004G131800 Sobic001G493700 Sobic001G493700 Sobic001G178300--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G178300--Sobic006G088200 Sobic001G275300 Sobic001G275300 Sobic001G178300--Sobic001G275300 Sobic006G056700 Sobic006G056700 Sobic001G178300--Sobic006G056700 Sobic001G537500 Sobic001G537500 Sobic001G178300--Sobic001G537500 Sobic003G104000 Sobic003G104000 Sobic002G256700--Sobic003G104000 Sobic002G256700--Sobic001G493700 Sobic007G054800 Sobic007G054800 Sobic002G256700--Sobic007G054800 Sobic001G251100 Sobic001G251100 Sobic002G256700--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic002G256700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G256700--Sobic004G131300 Sobic006G280000 Sobic006G280000 Sobic002G256700--Sobic006G280000 Sobic002G133300 Sobic002G133300 Sobic002G256700--Sobic002G133300 Sobic001G117200 Sobic001G117200 Sobic002G256700--Sobic001G117200 Sobic007G000200 Sobic007G000200 Sobic008G002300--Sobic007G000200 Sobic001G542450 Sobic001G542450 Sobic008G002300--Sobic001G542450 Sobic008G002300--Sobic006G088200 Sobic008G002300--Sobic001G178300 Sobic006G032300 Sobic006G032300 Sobic008G002300--Sobic006G032300 Sobic002G029100 Sobic002G029100 Sobic008G002300--Sobic002G029100 Sobic008G002300--Sobic002G256700 Sobic002G245000 Sobic002G245000 Sobic008G002300--Sobic002G245000 Sobic008G002300--Sobic001G493700 Sobic006G250300--Sobic001G178300 Sobic001G456300 Sobic001G456300 Sobic006G250300--Sobic001G456300 Sobic006G250300--Sobic006G056700 Sobic006G250300--Sobic001G542450 Sobic002G371300 Sobic002G371300 Sobic006G250300--Sobic002G371300 Sobic009G164000 Sobic009G164000 Sobic006G250300--Sobic009G164000 Sobic003G046300 Sobic003G046300 Sobic006G250300--Sobic003G046300 Sobic001G430400 Sobic001G430400 Sobic006G250300--Sobic001G430400 Sobic004G353000 Sobic004G353000 Sobic006G250300--Sobic004G353000 Sobic003G176000 Sobic003G176000 Sobic004G131800--Sobic003G176000 Sobic002G211800 Sobic002G211800 Sobic004G131800--Sobic002G211800 Sobic002G170200 Sobic002G170200 Sobic004G131800--Sobic002G170200 Sobic006G127600 Sobic006G127600 Sobic004G131800--Sobic006G127600 Sobic010G032900 Sobic010G032900 Sobic004G131800--Sobic010G032900 Sobic002G344000 Sobic002G344000 Sobic004G131800--Sobic002G344000 Sobic004G131800--Sobic006G056700 Sobic004G131800--Sobic001G178300 Sobic002G294800 Sobic002G294800 Sobic004G131800--Sobic002G294800 Sobic002G179400 Sobic002G179400 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic001G493700--Sobic006G088200 Sobic003G095900 Sobic003G095900 Sobic006G088200--Sobic003G095900 Sobic003G360400 Sobic003G360400 Sobic006G088200--Sobic003G360400 Sobic006G088200--Sobic001G493700 Sobic006G088200--Sobic001G275300 Sobic006G088200--Sobic002G133300 Sobic003G379200 Sobic003G379200 Sobic006G088200--Sobic003G379200 Sobic003G214600 Sobic003G214600 Sobic006G088200--Sobic003G214600 Sobic001G433800 Sobic001G433800 Sobic006G088200--Sobic001G433800 Sobic001G227400 Sobic001G227400 Sobic006G088200--Sobic001G227400 Sobic001G275300--Sobic006G088200 Sobic001G275300--Sobic003G214600 Sobic007G000300 Sobic007G000300 Sobic001G275300--Sobic007G000300 Sobic001G275300--Sobic003G095900 Sobic001G275300--Sobic006G056700 Sobic004G158400 Sobic004G158400 Sobic001G275300--Sobic004G158400 Sobic001G058200 Sobic001G058200 Sobic001G275300--Sobic001G058200 Sobic007G159900 Sobic007G159900 Sobic001G275300--Sobic007G159900 Sobic005G167700 Sobic005G167700 Sobic001G275300--Sobic005G167700 Sobic006G096900 Sobic006G096900 Sobic006G056700--Sobic006G096900 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic006G056700--Sobic001G275300 Sobic008G063300 Sobic008G063300 Sobic006G056700--Sobic008G063300 Sobic006G056700--Sobic002G170200 Sobic006G056700--Sobic004G131800 Sobic006G056700--Sobic007G159900 Sobic006G056700--Sobic003G360400 Sobic006G073200 Sobic006G073200 Sobic001G537500--Sobic006G073200 Sobic004G167200 Sobic004G167200 Sobic001G537500--Sobic004G167200 Sobic006G002800 Sobic006G002800 Sobic001G537500--Sobic006G002800 Sobic004G275600 Sobic004G275600 Sobic001G537500--Sobic004G275600 Sobic004G257100 Sobic004G257100 Sobic001G537500--Sobic004G257100 Sobic007G145400 Sobic007G145400 Sobic001G537500--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G537500--Sobic005G115500 Sobic001G537500--Sobic001G178300 Sobic002G246700 Sobic002G246700 Sobic001G537500--Sobic002G246700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.