Gene annotation
Transcriptome id Sobic.004G344000.2,Sobic.004G344000.3,Sobic.004G344000.1,Sobic.004G344000.4
Synonym Sb04g037120
Functional annotation expressed protein
UniProt A0A1Z5RR84 , A0A1Z5RQD2 , C5XVV6 , A0A1Z5RRC8
Pfam PF00702 PF13242
Panther DB PTHR19288 PTHR19288:SF38
NCBI CDD KOG2914; Predicted haloacid-halidohydrolase and related hydrolases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33255 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os02g57100.1 : expressed protein
MaizeGDB (Corn) Zm00025a032812
Brachypodium KQK01339 , KQK01340
Barley HORVU6Hr1G090380.2 , HORVU6Hr1G090380.1
Wheat TraesCS6D02G371900 , TraesCS5A02G319600 , TraesCS5A02G319600 , TraesCS5A02G319600 , TraesCS6D02G371900 , TraesCS6B02G427000
Populus -


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cDNA sequences
Sobic.004G344000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G026000 expressed protein -
2 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
3 Sobic.010G183300 - -
4 Sobic.003G310300 pentatricopeptide repeat domain containing protein, putative, expressed -
5 Sobic.006G093300 expressed protein K02519: infB, translation initiation factor IF-2
6 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
7 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
8 Sobic.001G178300 DNA-binding protein, putative, expressed -
9 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
10 Sobic.002G170200 zinc finger family protein, putative, expressed -
11 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
12 Sobic.003G241700 SET domain containing protein, expressed -
13 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
14 Sobic.007G079400 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
15 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
16 Sobic.004G243600 AAA-type ATPase family protein, putative, expressed -
17 Sobic.002G317100 PPR repeat containing protein, expressed -
18 Sobic.004G018000 bifunctional protein folD, putative, expressed -
19 Sobic.003G311900 CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed -
20 Sobic.010G204900 formamidopyrimidine-DNA glycosylase, putative, expressed K10563: mutM, formamidopyrimidine-DNA glycosylase


Gene co-expression network
sample Sobic004G344000 Sobic004G344000 Sobic005G026000 Sobic005G026000 Sobic004G344000--Sobic005G026000 Sobic001G275300 Sobic001G275300 Sobic004G344000--Sobic001G275300 Sobic010G183300 Sobic010G183300 Sobic004G344000--Sobic010G183300 Sobic003G310300 Sobic003G310300 Sobic004G344000--Sobic003G310300 Sobic006G093300 Sobic006G093300 Sobic004G344000--Sobic006G093300 Sobic003G107500 Sobic003G107500 Sobic004G344000--Sobic003G107500 Sobic006G039400 Sobic006G039400 Sobic004G344000--Sobic006G039400 Sobic001G178300 Sobic001G178300 Sobic004G344000--Sobic001G178300 Sobic001G153300 Sobic001G153300 Sobic004G344000--Sobic001G153300 Sobic010G100800 Sobic010G100800 Sobic005G026000--Sobic010G100800 Sobic003G311900 Sobic003G311900 Sobic005G026000--Sobic003G311900 Sobic004G262700 Sobic004G262700 Sobic005G026000--Sobic004G262700 Sobic002G167500 Sobic002G167500 Sobic005G026000--Sobic002G167500 Sobic005G026000--Sobic004G344000 Sobic001G124100 Sobic001G124100 Sobic005G026000--Sobic001G124100 Sobic003G264800 Sobic003G264800 Sobic005G026000--Sobic003G264800 Sobic001G049500 Sobic001G049500 Sobic005G026000--Sobic001G049500 Sobic005G026000--Sobic003G107500 Sobic006G088200 Sobic006G088200 Sobic001G275300--Sobic006G088200 Sobic003G214600 Sobic003G214600 Sobic001G275300--Sobic003G214600 Sobic007G000300 Sobic007G000300 Sobic001G275300--Sobic007G000300 Sobic003G095900 Sobic003G095900 Sobic001G275300--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic001G275300--Sobic006G056700 Sobic004G158400 Sobic004G158400 Sobic001G275300--Sobic004G158400 Sobic001G058200 Sobic001G058200 Sobic001G275300--Sobic001G058200 Sobic007G159900 Sobic007G159900 Sobic001G275300--Sobic007G159900 Sobic005G167700 Sobic005G167700 Sobic001G275300--Sobic005G167700 Sobic003G186900 Sobic003G186900 Sobic010G183300--Sobic003G186900 Sobic002G257750 Sobic002G257750 Sobic010G183300--Sobic002G257750 Sobic004G244900 Sobic004G244900 Sobic010G183300--Sobic004G244900 Sobic003G119600 Sobic003G119600 Sobic010G183300--Sobic003G119600 Sobic008G054000 Sobic008G054000 Sobic010G183300--Sobic008G054000 Sobic009G201300 Sobic009G201300 Sobic010G183300--Sobic009G201300 Sobic010G183300--Sobic003G264800 Sobic002G383800 Sobic002G383800 Sobic010G183300--Sobic002G383800 Sobic005G106600 Sobic005G106600 Sobic010G183300--Sobic005G106600 Sobic002G252400 Sobic002G252400 Sobic003G310300--Sobic002G252400 Sobic003G043000 Sobic003G043000 Sobic003G310300--Sobic003G043000 Sobic003G296900 Sobic003G296900 Sobic003G310300--Sobic003G296900 Sobic008G037700 Sobic008G037700 Sobic003G310300--Sobic008G037700 Sobic003G241700 Sobic003G241700 Sobic003G310300--Sobic003G241700 Sobic003G310300--Sobic003G107500 Sobic004G265500 Sobic004G265500 Sobic003G310300--Sobic004G265500 Sobic003G308500 Sobic003G308500 Sobic003G310300--Sobic003G308500 Sobic005G038500 Sobic005G038500 Sobic003G310300--Sobic005G038500 Sobic006G093300--Sobic006G039400 Sobic001G434200 Sobic001G434200 Sobic006G093300--Sobic001G434200 Sobic008G185800 Sobic008G185800 Sobic006G093300--Sobic008G185800 Sobic006G093300--Sobic003G241700 Sobic001G283600 Sobic001G283600 Sobic006G093300--Sobic001G283600 Sobic001G333100 Sobic001G333100 Sobic006G093300--Sobic001G333100 Sobic006G093300--Sobic003G308500 Sobic006G093300--Sobic003G296900 Sobic006G184900 Sobic006G184900 Sobic006G093300--Sobic006G184900 Sobic004G001500 Sobic004G001500 Sobic003G107500--Sobic004G001500 Sobic002G043800 Sobic002G043800 Sobic003G107500--Sobic002G043800 Sobic002G383600 Sobic002G383600 Sobic003G107500--Sobic002G383600 Sobic001G310100 Sobic001G310100 Sobic003G107500--Sobic001G310100 Sobic004G146600 Sobic004G146600 Sobic003G107500--Sobic004G146600 Sobic003G298200 Sobic003G298200 Sobic003G107500--Sobic003G298200 Sobic003G373500 Sobic003G373500 Sobic003G107500--Sobic003G373500 Sobic005G187300 Sobic005G187300 Sobic003G107500--Sobic005G187300 Sobic010G014100 Sobic010G014100 Sobic003G107500--Sobic010G014100 Sobic006G039400--Sobic006G093300 Sobic001G405600 Sobic001G405600 Sobic006G039400--Sobic001G405600 Sobic006G039400--Sobic003G296900 Sobic001G237600 Sobic001G237600 Sobic006G039400--Sobic001G237600 Sobic003G182300 Sobic003G182300 Sobic006G039400--Sobic003G182300 Sobic010G230600 Sobic010G230600 Sobic006G039400--Sobic010G230600 Sobic007G162100 Sobic007G162100 Sobic006G039400--Sobic007G162100 Sobic007G087000 Sobic007G087000 Sobic006G039400--Sobic007G087000 Sobic006G039400--Sobic001G283600 Sobic002G256700 Sobic002G256700 Sobic001G178300--Sobic002G256700 Sobic008G002300 Sobic008G002300 Sobic001G178300--Sobic008G002300 Sobic006G250300 Sobic006G250300 Sobic001G178300--Sobic006G250300 Sobic004G131800 Sobic004G131800 Sobic001G178300--Sobic004G131800 Sobic001G493700 Sobic001G493700 Sobic001G178300--Sobic001G493700 Sobic001G178300--Sobic006G088200 Sobic001G178300--Sobic001G275300 Sobic001G178300--Sobic006G056700 Sobic001G537500 Sobic001G537500 Sobic001G178300--Sobic001G537500 Sobic008G038600 Sobic008G038600 Sobic001G153300--Sobic008G038600 Sobic006G269800 Sobic006G269800 Sobic001G153300--Sobic006G269800 Sobic010G204900 Sobic010G204900 Sobic001G153300--Sobic010G204900 Sobic002G155000 Sobic002G155000 Sobic001G153300--Sobic002G155000 Sobic007G030800 Sobic007G030800 Sobic001G153300--Sobic007G030800 Sobic001G025800 Sobic001G025800 Sobic001G153300--Sobic001G025800 Sobic001G153300--Sobic004G344000 Sobic006G258300 Sobic006G258300 Sobic001G153300--Sobic006G258300 Sobic002G109600 Sobic002G109600 Sobic001G153300--Sobic002G109600
Octagon: transcription factors


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