Gene annotation
Transcriptome id Sobic.010G204900.2,Sobic.010G204900.1,Sobic.010G204900.3
Synonym ATFPG-1, ATMMH-2, MMH-1, Sb10g025220, FPG-2, MMH-2, FPG-1, ATMMH-1, ATFPG-2
Functional annotation formamidopyrimidine-DNA glycosylase, putative, expressed
UniProt A0A1W0VTZ6 , C5Z6P0
Pfam PF06831 PF01149 PF06831
Panther DB PTHR22993 PTHR22993:SF17
NCBI CDD -
KEGG Orthology K10563; mutM, formamidopyrimidine-DNA glycosylase
Gene Ontology GO:0016799; hydrolase activity, hydrolyzing N-glycosyl compounds GO:0008270zinc ion binding GO:0006284base-excision repair GO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0003684damaged DNA binding GO:0006289nucleotide-excision repair GO:0016799hydrolase activity, hydrolyzing N-glycosyl compounds GO:0008270zinc ion binding GO:0006289nucleotide-excision repair GO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0003684damaged DNA binding


Orthologs (automatic annotation)
TAIR AT1G52500 : MUTM homolog-1
RAP-DB (Rice) LOC_Os06g43610.1 : formamidopyrimidine-DNA glycosylase, putative, expressed
MaizeGDB (Corn) Zm00025a042071
Brachypodium KQK16771 , KQK16772 , KQK16773 , KQJ96001 , KQJ95999 , PNT75341 , KQJ96000
Barley HORVU7Hr1G115580.1 , HORVU7Hr1G115580.3 , HORVU7Hr1G115580.2 , HORVU7Hr1G115580.5 , HORVU7Hr1G115580.4 , HORVU7Hr1G115580.7 , HORVU7Hr1G115580.6 , HORVU2Hr1G003290.1
Wheat TraesCS2D02G022800 , TraesCS7D02G508400 , TraesCS2A02G022000 , TraesCS7B02G434500 , TraesCS2B02G030800 , TraesCS7A02G518500 , TraesCS7A02G518400
Populus -


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cDNA sequences
Sobic.010G204900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G032200 transporter, major facilitator superfamily domain containing protein, expressed -
2 Sobic.001G025800 pentatricopeptide, putative, expressed -
3 Sobic.003G267500 expressed protein -
4 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
5 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
6 Sobic.004G130300 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
7 Sobic.001G250700 expressed protein -
8 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
9 Sobic.005G117300 ABC transporter, ATP-binding protein, putative, expressed -
10 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
11 Sobic.008G011300 GIY-YIG catalytic domain containing protein, putative, expressed K15078: structure-specific endonuclease subunit SLX1
12 Sobic.009G005400 ABC transporter, ATP-binding protein, putative, expressed -
13 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
14 Sobic.005G023800 expressed protein -
15 Sobic.010G140400 poor homologous synapsis 1 protein, putative, expressed -
16 Sobic.001G532600 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
17 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
18 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
19 Sobic.008G095400 - -
20 Sobic.008G090900 expressed protein -


Gene co-expression network
sample Sobic010G204900 Sobic010G204900 Sobic001G032200 Sobic001G032200 Sobic010G204900--Sobic001G032200 Sobic001G025800 Sobic001G025800 Sobic010G204900--Sobic001G025800 Sobic003G267500 Sobic003G267500 Sobic010G204900--Sobic003G267500 Sobic010G100800 Sobic010G100800 Sobic010G204900--Sobic010G100800 Sobic003G120300 Sobic003G120300 Sobic010G204900--Sobic003G120300 Sobic004G130300 Sobic004G130300 Sobic010G204900--Sobic004G130300 Sobic001G250700 Sobic001G250700 Sobic010G204900--Sobic001G250700 Sobic004G003900 Sobic004G003900 Sobic010G204900--Sobic004G003900 Sobic005G117300 Sobic005G117300 Sobic010G204900--Sobic005G117300 Sobic008G011300 Sobic008G011300 Sobic001G032200--Sobic008G011300 Sobic001G032200--Sobic010G204900 Sobic007G211800 Sobic007G211800 Sobic001G032200--Sobic007G211800 Sobic001G495400 Sobic001G495400 Sobic001G032200--Sobic001G495400 Sobic004G162500 Sobic004G162500 Sobic001G032200--Sobic004G162500 Sobic009G160500 Sobic009G160500 Sobic001G032200--Sobic009G160500 Sobic001G346600 Sobic001G346600 Sobic001G032200--Sobic001G346600 Sobic002G138300 Sobic002G138300 Sobic001G032200--Sobic002G138300 Sobic001G032200--Sobic001G025800 Sobic001G025800--Sobic004G003900 Sobic001G025800--Sobic005G117300 Sobic001G495200 Sobic001G495200 Sobic001G025800--Sobic001G495200 Sobic002G048200 Sobic002G048200 Sobic001G025800--Sobic002G048200 Sobic009G251000 Sobic009G251000 Sobic001G025800--Sobic009G251000 Sobic001G513800 Sobic001G513800 Sobic001G025800--Sobic001G513800 Sobic001G025800--Sobic003G267500 Sobic007G015300 Sobic007G015300 Sobic001G025800--Sobic007G015300 Sobic009G092900 Sobic009G092900 Sobic001G025800--Sobic009G092900 Sobic003G267500--Sobic001G025800 Sobic003G267500--Sobic005G117300 Sobic003G267500--Sobic010G204900 Sobic006G047300 Sobic006G047300 Sobic003G267500--Sobic006G047300 Sobic004G301200 Sobic004G301200 Sobic003G267500--Sobic004G301200 Sobic009G005400 Sobic009G005400 Sobic003G267500--Sobic009G005400 Sobic002G013700 Sobic002G013700 Sobic003G267500--Sobic002G013700 Sobic010G134500 Sobic010G134500 Sobic003G267500--Sobic010G134500 Sobic007G090537 Sobic007G090537 Sobic003G267500--Sobic007G090537 Sobic001G501300 Sobic001G501300 Sobic010G100800--Sobic001G501300 Sobic001G261900 Sobic001G261900 Sobic010G100800--Sobic001G261900 Sobic005G026000 Sobic005G026000 Sobic010G100800--Sobic005G026000 Sobic001G300100 Sobic001G300100 Sobic010G100800--Sobic001G300100 Sobic002G404200 Sobic002G404200 Sobic010G100800--Sobic002G404200 Sobic010G086900 Sobic010G086900 Sobic010G100800--Sobic010G086900 Sobic002G031700 Sobic002G031700 Sobic010G100800--Sobic002G031700 Sobic001G275300 Sobic001G275300 Sobic010G100800--Sobic001G275300 Sobic003G193200 Sobic003G193200 Sobic010G100800--Sobic003G193200 Sobic002G424900 Sobic002G424900 Sobic003G120300--Sobic002G424900 Sobic009G129100 Sobic009G129100 Sobic003G120300--Sobic009G129100 Sobic006G216100 Sobic006G216100 Sobic003G120300--Sobic006G216100 Sobic001G455600 Sobic001G455600 Sobic003G120300--Sobic001G455600 Sobic010G034100 Sobic010G034100 Sobic003G120300--Sobic010G034100 Sobic009G107300 Sobic009G107300 Sobic003G120300--Sobic009G107300 Sobic007G017800 Sobic007G017800 Sobic003G120300--Sobic007G017800 Sobic002G042800 Sobic002G042800 Sobic003G120300--Sobic002G042800 Sobic002G425500 Sobic002G425500 Sobic003G120300--Sobic002G425500 Sobic001G532600 Sobic001G532600 Sobic004G130300--Sobic001G532600 Sobic003G241700 Sobic003G241700 Sobic004G130300--Sobic003G241700 Sobic007G125000 Sobic007G125000 Sobic004G130300--Sobic007G125000 Sobic004G130300--Sobic010G204900 Sobic001G014200 Sobic001G014200 Sobic004G130300--Sobic001G014200 Sobic006G039400 Sobic006G039400 Sobic004G130300--Sobic006G039400 Sobic001G405600 Sobic001G405600 Sobic004G130300--Sobic001G405600 Sobic003G311900 Sobic003G311900 Sobic004G130300--Sobic003G311900 Sobic005G023800 Sobic005G023800 Sobic004G130300--Sobic005G023800 Sobic001G155400 Sobic001G155400 Sobic001G250700--Sobic001G155400 Sobic010G237900 Sobic010G237900 Sobic001G250700--Sobic010G237900 Sobic009G228000 Sobic009G228000 Sobic001G250700--Sobic009G228000 Sobic010G145800 Sobic010G145800 Sobic001G250700--Sobic010G145800 Sobic001G248100 Sobic001G248100 Sobic001G250700--Sobic001G248100 Sobic001G250700--Sobic009G107300 Sobic008G000400 Sobic008G000400 Sobic001G250700--Sobic008G000400 Sobic001G250700--Sobic010G204900 Sobic001G250700--Sobic006G039400 Sobic001G375000 Sobic001G375000 Sobic004G003900--Sobic001G375000 Sobic008G090900 Sobic008G090900 Sobic004G003900--Sobic008G090900 Sobic003G128400 Sobic003G128400 Sobic004G003900--Sobic003G128400 Sobic004G003900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic004G003900--Sobic002G181132 Sobic003G045300 Sobic003G045300 Sobic004G003900--Sobic003G045300 Sobic003G162800 Sobic003G162800 Sobic004G003900--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900 Sobic005G117300--Sobic004G003900 Sobic005G117300--Sobic009G092900 Sobic009G085200 Sobic009G085200 Sobic005G117300--Sobic009G085200 Sobic005G117300--Sobic001G025800 Sobic005G117300--Sobic008G090900 Sobic004G065300 Sobic004G065300 Sobic005G117300--Sobic004G065300 Sobic005G117300--Sobic001G346600 Sobic005G117300--Sobic001G495200 Sobic007G208300 Sobic007G208300 Sobic005G117300--Sobic007G208300
Octagon: transcription factors


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