Gene annotation
Transcriptome id Sobic.001G250700.2,Sobic.001G250700.1
Synonym Sb01g022170
Functional annotation expressed protein
UniProt A0A1B6QKX0 , A0A1B6QKU6
Pfam PF09496
Panther DB PTHR14582
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0000776; kinetochore GO:0000776kinetochore


Orthologs (automatic annotation)
TAIR AT5G10710 : -
RAP-DB (Rice) LOC_Os04g21610.1 : expressed protein
MaizeGDB (Corn) Zm00025a006962
Brachypodium KQK20666
Barley HORVU6Hr1G002520.1 , HORVU6Hr1G002520.3 , HORVU6Hr1G002520.2 , HORVU6Hr1G002520.5 , HORVU6Hr1G002520.4 , HORVU6Hr1G002520.7 , HORVU6Hr1G002520.9 , HORVU6Hr1G002520.8 , HORVU6Hr1G002520.15 , HORVU6Hr1G002520.14 , HORVU6Hr1G002520.17 , HORVU6Hr1G002520.16 , HORVU6Hr1G002520.11 , HORVU6Hr1G002520.10 , HORVU6Hr1G002520.13 , HORVU6Hr1G002520.12 , HORVU6Hr1G002520.19 , HORVU6Hr1G002520.18 , HORVU6Hr1G002520.20 , HORVU6Hr1G002520.21
Wheat TraesCS6B02G020300 , TraesCS6A02G013400 , TraesCS6B02G020300 , TraesCS6D02G016500 , TraesCS3D02G493500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G250700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G155400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
2 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
3 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
4 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
5 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
6 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
7 Sobic.008G000400 GHMP kinases ATP-binding protein, putative, expressed K16190: glucuronokinase
8 Sobic.010G204900 formamidopyrimidine-DNA glycosylase, putative, expressed K10563: mutM, formamidopyrimidine-DNA glycosylase
9 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
10 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
11 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
12 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
13 Sobic.001G156900 single myb histone, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
15 Sobic.010G068700 transporter family protein, putative, expressed K15281: solute carrier family 35
16 Sobic.003G167900 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
17 Sobic.008G088875 - -
18 Sobic.002G170200 zinc finger family protein, putative, expressed -
19 Sobic.010G187600 26S protease regulatory subunit S10B, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
20 Sobic.004G172500 expressed protein -


Gene co-expression network
sample Sobic001G250700 Sobic001G250700 Sobic001G155400 Sobic001G155400 Sobic001G250700--Sobic001G155400 Sobic010G237900 Sobic010G237900 Sobic001G250700--Sobic010G237900 Sobic009G228000 Sobic009G228000 Sobic001G250700--Sobic009G228000 Sobic010G145800 Sobic010G145800 Sobic001G250700--Sobic010G145800 Sobic001G248100 Sobic001G248100 Sobic001G250700--Sobic001G248100 Sobic009G107300 Sobic009G107300 Sobic001G250700--Sobic009G107300 Sobic008G000400 Sobic008G000400 Sobic001G250700--Sobic008G000400 Sobic010G204900 Sobic010G204900 Sobic001G250700--Sobic010G204900 Sobic006G039400 Sobic006G039400 Sobic001G250700--Sobic006G039400 Sobic002G425500 Sobic002G425500 Sobic001G155400--Sobic002G425500 Sobic001G035200 Sobic001G035200 Sobic001G155400--Sobic001G035200 Sobic003G413100 Sobic003G413100 Sobic001G155400--Sobic003G413100 Sobic010G096000 Sobic010G096000 Sobic001G155400--Sobic010G096000 Sobic002G063900 Sobic002G063900 Sobic001G155400--Sobic002G063900 Sobic001G155400--Sobic010G145800 Sobic010G140400 Sobic010G140400 Sobic001G155400--Sobic010G140400 Sobic008G173100 Sobic008G173100 Sobic001G155400--Sobic008G173100 Sobic001G020000 Sobic001G020000 Sobic001G155400--Sobic001G020000 Sobic004G129300 Sobic004G129300 Sobic010G237900--Sobic004G129300 Sobic007G191700 Sobic007G191700 Sobic010G237900--Sobic007G191700 Sobic001G002600 Sobic001G002600 Sobic010G237900--Sobic001G002600 Sobic007G084100 Sobic007G084100 Sobic010G237900--Sobic007G084100 Sobic010G237900--Sobic002G425500 Sobic006G014100 Sobic006G014100 Sobic010G237900--Sobic006G014100 Sobic003G121300 Sobic003G121300 Sobic010G237900--Sobic003G121300 Sobic004G156800 Sobic004G156800 Sobic010G237900--Sobic004G156800 Sobic010G237900--Sobic010G145800 Sobic009G228000--Sobic009G107300 Sobic003G043000 Sobic003G043000 Sobic009G228000--Sobic003G043000 Sobic004G240400 Sobic004G240400 Sobic009G228000--Sobic004G240400 Sobic003G241700 Sobic003G241700 Sobic009G228000--Sobic003G241700 Sobic003G363700 Sobic003G363700 Sobic009G228000--Sobic003G363700 Sobic009G228000--Sobic002G063900 Sobic003G297500 Sobic003G297500 Sobic009G228000--Sobic003G297500 Sobic004G209700 Sobic004G209700 Sobic009G228000--Sobic004G209700 Sobic006G234700 Sobic006G234700 Sobic009G228000--Sobic006G234700 Sobic007G203200 Sobic007G203200 Sobic010G145800--Sobic007G203200 Sobic010G145800--Sobic010G140400 Sobic010G145800--Sobic001G002600 Sobic001G227200 Sobic001G227200 Sobic010G145800--Sobic001G227200 Sobic009G260500 Sobic009G260500 Sobic010G145800--Sobic009G260500 Sobic007G011600 Sobic007G011600 Sobic010G145800--Sobic007G011600 Sobic001G083400 Sobic001G083400 Sobic010G145800--Sobic001G083400 Sobic010G145800--Sobic010G237900 Sobic001G219600 Sobic001G219600 Sobic010G145800--Sobic001G219600 Sobic002G412700 Sobic002G412700 Sobic001G248100--Sobic002G412700 Sobic010G000800 Sobic010G000800 Sobic001G248100--Sobic010G000800 Sobic007G145400 Sobic007G145400 Sobic001G248100--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G248100--Sobic005G115500 Sobic010G262100 Sobic010G262100 Sobic001G248100--Sobic010G262100 Sobic006G261400 Sobic006G261400 Sobic001G248100--Sobic006G261400 Sobic002G160700 Sobic002G160700 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic003G405500 Sobic003G405500 Sobic001G248100--Sobic003G405500 Sobic009G107300--Sobic009G228000 Sobic007G087000 Sobic007G087000 Sobic009G107300--Sobic007G087000 Sobic009G107300--Sobic004G240400 Sobic008G116700 Sobic008G116700 Sobic009G107300--Sobic008G116700 Sobic009G107300--Sobic003G043000 Sobic004G198600 Sobic004G198600 Sobic009G107300--Sobic004G198600 Sobic003G120300 Sobic003G120300 Sobic009G107300--Sobic003G120300 Sobic003G181700 Sobic003G181700 Sobic009G107300--Sobic003G181700 Sobic001G156900 Sobic001G156900 Sobic009G107300--Sobic001G156900 Sobic008G000400--Sobic001G250700 Sobic008G157200 Sobic008G157200 Sobic008G000400--Sobic008G157200 Sobic003G167900 Sobic003G167900 Sobic008G000400--Sobic003G167900 Sobic006G073200 Sobic006G073200 Sobic008G000400--Sobic006G073200 Sobic010G100800 Sobic010G100800 Sobic008G000400--Sobic010G100800 Sobic004G171200 Sobic004G171200 Sobic008G000400--Sobic004G171200 Sobic002G218500 Sobic002G218500 Sobic008G000400--Sobic002G218500 Sobic002G291400 Sobic002G291400 Sobic008G000400--Sobic002G291400 Sobic007G046500 Sobic007G046500 Sobic008G000400--Sobic007G046500 Sobic001G032200 Sobic001G032200 Sobic010G204900--Sobic001G032200 Sobic001G025800 Sobic001G025800 Sobic010G204900--Sobic001G025800 Sobic003G267500 Sobic003G267500 Sobic010G204900--Sobic003G267500 Sobic010G204900--Sobic010G100800 Sobic010G204900--Sobic003G120300 Sobic004G130300 Sobic004G130300 Sobic010G204900--Sobic004G130300 Sobic010G204900--Sobic001G250700 Sobic004G003900 Sobic004G003900 Sobic010G204900--Sobic004G003900 Sobic005G117300 Sobic005G117300 Sobic010G204900--Sobic005G117300 Sobic006G093300 Sobic006G093300 Sobic006G039400--Sobic006G093300 Sobic001G405600 Sobic001G405600 Sobic006G039400--Sobic001G405600 Sobic003G296900 Sobic003G296900 Sobic006G039400--Sobic003G296900 Sobic001G237600 Sobic001G237600 Sobic006G039400--Sobic001G237600 Sobic003G182300 Sobic003G182300 Sobic006G039400--Sobic003G182300 Sobic010G230600 Sobic010G230600 Sobic006G039400--Sobic010G230600 Sobic007G162100 Sobic007G162100 Sobic006G039400--Sobic007G162100 Sobic006G039400--Sobic007G087000 Sobic001G283600 Sobic001G283600 Sobic006G039400--Sobic001G283600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.