Gene annotation
Transcriptome id Sobic.008G000400.1
Synonym ATGLCAK, Sb08g000220, GLCAK
Functional annotation GHMP kinases ATP-binding protein, putative, expressed
UniProt C5YPP6
Pfam PF08544 PF00288
Panther DB PTHR10457 PTHR10457:SF13
NCBI CDD KOG1511; Mevalonate kinase MVK/ERG12
KEGG Orthology K16190; glucuronokinase
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT3G01640 : glucuronokinase G
RAP-DB (Rice) LOC_Os11g11060.1 : GHMP kinases ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a003646
Brachypodium KQJ92963 , PNT65747
Barley -
Wheat TraesCS6B02G095900 , TraesCS6A02G071400 , TraesCS6D02G069600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G250700 expressed protein -
2 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
3 Sobic.003G167900 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
4 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
5 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
6 Sobic.004G171200 WD domain, G-beta repeat domain containing protein, expressed K13124: mitogen-activated protein kinase organizer 1
7 Sobic.002G218500 lecithine cholesterol acyltransferase, putative, expressed K00679: phospholipid:diacylglycerol acyltransferase
8 Sobic.002G291400 nicotinate-nucleotide pyrophosphorylase, putative, expressed K00767: nadC, nicotinate-nucleotide pyrophosphorylase (carboxylating)
9 Sobic.007G046500 60S ribosomal protein L18a-1, putative, expressed -
10 Sobic.009G002300 expressed protein -
11 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
12 Sobic.010G204900 formamidopyrimidine-DNA glycosylase, putative, expressed K10563: mutM, formamidopyrimidine-DNA glycosylase
13 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
14 Sobic.009G092020 - -
15 Sobic.001G276200 ACI13, putative, expressed -
16 Sobic.008G048300 transcription elongation factor protein, putative, expressed -
17 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
18 Sobic.008G004300 outer membrane protein, OMP85 family, putative, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
19 Sobic.007G029700 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
20 Sobic.010G140400 poor homologous synapsis 1 protein, putative, expressed -


Gene co-expression network
sample Sobic008G000400 Sobic008G000400 Sobic001G250700 Sobic001G250700 Sobic008G000400--Sobic001G250700 Sobic008G157200 Sobic008G157200 Sobic008G000400--Sobic008G157200 Sobic003G167900 Sobic003G167900 Sobic008G000400--Sobic003G167900 Sobic006G073200 Sobic006G073200 Sobic008G000400--Sobic006G073200 Sobic010G100800 Sobic010G100800 Sobic008G000400--Sobic010G100800 Sobic004G171200 Sobic004G171200 Sobic008G000400--Sobic004G171200 Sobic002G218500 Sobic002G218500 Sobic008G000400--Sobic002G218500 Sobic002G291400 Sobic002G291400 Sobic008G000400--Sobic002G291400 Sobic007G046500 Sobic007G046500 Sobic008G000400--Sobic007G046500 Sobic001G155400 Sobic001G155400 Sobic001G250700--Sobic001G155400 Sobic010G237900 Sobic010G237900 Sobic001G250700--Sobic010G237900 Sobic009G228000 Sobic009G228000 Sobic001G250700--Sobic009G228000 Sobic010G145800 Sobic010G145800 Sobic001G250700--Sobic010G145800 Sobic001G248100 Sobic001G248100 Sobic001G250700--Sobic001G248100 Sobic009G107300 Sobic009G107300 Sobic001G250700--Sobic009G107300 Sobic001G250700--Sobic008G000400 Sobic010G204900 Sobic010G204900 Sobic001G250700--Sobic010G204900 Sobic006G039400 Sobic006G039400 Sobic001G250700--Sobic006G039400 Sobic008G157200--Sobic006G073200 Sobic006G127600 Sobic006G127600 Sobic008G157200--Sobic006G127600 Sobic004G131300 Sobic004G131300 Sobic008G157200--Sobic004G131300 Sobic009G084900 Sobic009G084900 Sobic008G157200--Sobic009G084900 Sobic003G314700 Sobic003G314700 Sobic008G157200--Sobic003G314700 Sobic007G162100 Sobic007G162100 Sobic008G157200--Sobic007G162100 Sobic003G405500 Sobic003G405500 Sobic008G157200--Sobic003G405500 Sobic008G157200--Sobic001G248100 Sobic001G404600 Sobic001G404600 Sobic008G157200--Sobic001G404600 Sobic003G167900--Sobic006G073200 Sobic002G083900 Sobic002G083900 Sobic003G167900--Sobic002G083900 Sobic003G167900--Sobic008G157200 Sobic002G412700 Sobic002G412700 Sobic003G167900--Sobic002G412700 Sobic003G167900--Sobic001G250700 Sobic003G167900--Sobic001G248100 Sobic003G167900--Sobic008G000400 Sobic006G035500 Sobic006G035500 Sobic003G167900--Sobic006G035500 Sobic010G206300 Sobic010G206300 Sobic003G167900--Sobic010G206300 Sobic006G073200--Sobic008G157200 Sobic004G257100 Sobic004G257100 Sobic006G073200--Sobic004G257100 Sobic001G431000 Sobic001G431000 Sobic006G073200--Sobic001G431000 Sobic001G537500 Sobic001G537500 Sobic006G073200--Sobic001G537500 Sobic001G493200 Sobic001G493200 Sobic006G073200--Sobic001G493200 Sobic008G135200 Sobic008G135200 Sobic006G073200--Sobic008G135200 Sobic006G036100 Sobic006G036100 Sobic006G073200--Sobic006G036100 Sobic006G073200--Sobic004G131300 Sobic001G251100 Sobic001G251100 Sobic006G073200--Sobic001G251100 Sobic001G501300 Sobic001G501300 Sobic010G100800--Sobic001G501300 Sobic001G261900 Sobic001G261900 Sobic010G100800--Sobic001G261900 Sobic005G026000 Sobic005G026000 Sobic010G100800--Sobic005G026000 Sobic001G300100 Sobic001G300100 Sobic010G100800--Sobic001G300100 Sobic002G404200 Sobic002G404200 Sobic010G100800--Sobic002G404200 Sobic010G086900 Sobic010G086900 Sobic010G100800--Sobic010G086900 Sobic002G031700 Sobic002G031700 Sobic010G100800--Sobic002G031700 Sobic001G275300 Sobic001G275300 Sobic010G100800--Sobic001G275300 Sobic003G193200 Sobic003G193200 Sobic010G100800--Sobic003G193200 Sobic008G051200 Sobic008G051200 Sobic004G171200--Sobic008G051200 Sobic002G298100 Sobic002G298100 Sobic004G171200--Sobic002G298100 Sobic001G434200 Sobic001G434200 Sobic004G171200--Sobic001G434200 Sobic010G059500 Sobic010G059500 Sobic004G171200--Sobic010G059500 Sobic004G171200--Sobic001G493200 Sobic001G120500 Sobic001G120500 Sobic004G171200--Sobic001G120500 Sobic009G239200 Sobic009G239200 Sobic004G171200--Sobic009G239200 Sobic006G155100 Sobic006G155100 Sobic004G171200--Sobic006G155100 Sobic007G097400 Sobic007G097400 Sobic004G171200--Sobic007G097400 Sobic006G128300 Sobic006G128300 Sobic002G218500--Sobic006G128300 Sobic006G031800 Sobic006G031800 Sobic002G218500--Sobic006G031800 Sobic006G038500 Sobic006G038500 Sobic002G218500--Sobic006G038500 Sobic001G043800 Sobic001G043800 Sobic002G218500--Sobic001G043800 Sobic002G431300 Sobic002G431300 Sobic002G218500--Sobic002G431300 Sobic007G029700 Sobic007G029700 Sobic002G218500--Sobic007G029700 Sobic001G516901 Sobic001G516901 Sobic002G218500--Sobic001G516901 Sobic004G079800 Sobic004G079800 Sobic002G218500--Sobic004G079800 Sobic005G084800 Sobic005G084800 Sobic002G218500--Sobic005G084800 Sobic002G291400--Sobic006G039400 Sobic008G021200 Sobic008G021200 Sobic002G291400--Sobic008G021200 Sobic002G291400--Sobic008G000400 Sobic005G018800 Sobic005G018800 Sobic002G291400--Sobic005G018800 Sobic002G291400--Sobic001G434200 Sobic006G277000 Sobic006G277000 Sobic002G291400--Sobic006G277000 Sobic002G131500 Sobic002G131500 Sobic002G291400--Sobic002G131500 Sobic005G140500 Sobic005G140500 Sobic002G291400--Sobic005G140500 Sobic008G152000 Sobic008G152000 Sobic002G291400--Sobic008G152000 Sobic010G080300 Sobic010G080300 Sobic007G046500--Sobic010G080300 Sobic002G281800 Sobic002G281800 Sobic007G046500--Sobic002G281800 Sobic007G046500--Sobic008G000400 Sobic007G046500--Sobic001G043800 Sobic001G078400 Sobic001G078400 Sobic007G046500--Sobic001G078400 Sobic002G167500 Sobic002G167500 Sobic007G046500--Sobic002G167500 Sobic008G072700 Sobic008G072700 Sobic007G046500--Sobic008G072700 Sobic007G046500--Sobic002G404200 Sobic003G439100 Sobic003G439100 Sobic007G046500--Sobic003G439100
Octagon: transcription factors


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