Gene annotation
Transcriptome id Sobic.009G002300.1
Synonym Sb09g000420
Functional annotation expressed protein
UniProt C5YXZ1
Pfam PF10366 PF00780 PF00637 PF10367
Panther DB PTHR12894 PTHR12894:SF17
NCBI CDD KOG2063; Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT1G22860 : Vacuolar sorting protein 39
RAP-DB (Rice) LOC_Os05g01360.1 : expressed protein
MaizeGDB (Corn) Zm00025a041005
Brachypodium KQK08131 , KQK08130 , KQK08089
Barley HORVU1Hr1G002390.9 , HORVU1Hr1G002390.8 , HORVU1Hr1G002390.1 , HORVU1Hr1G002390.3 , HORVU1Hr1G002390.2 , HORVU1Hr1G002390.5 , HORVU1Hr1G002390.4 , HORVU1Hr1G002390.7 , HORVU1Hr1G002390.6 , HORVU1Hr1G002390.10
Wheat TraesCS1B02G017200 , TraesCS1B02G017200 , TraesCS1B02G017200 , TraesCS1D02G010700 , TraesCS1A02G012500 , TraesCS1A02G012500 , TraesCS1A02G012500 , TraesCS1A02G012500
Populus -


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cDNA sequences
Sobic.009G002300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G148750 - -
2 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
3 Sobic.003G168100 BZIP protein, putative, expressed -
4 Sobic.008G088806 - K16280: E3 ubiquitin-protein ligase RGLG
5 Sobic.006G031800 - -
6 Sobic.001G145000 expressed protein K14376: poly(A) polymerase
7 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
8 Sobic.005G059800 RNA recognition motif containing protein, putative, expressed K14407: CSTF2, cleavage stimulation factor subunit 2
9 Sobic.010G140400 poor homologous synapsis 1 protein, putative, expressed -
10 Sobic.006G271800 potasium efflux antiporter protein, putative, expressed -
11 Sobic.009G132700 - -
12 Sobic.008G070800 expressed protein -
13 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
14 Sobic.002G218500 lecithine cholesterol acyltransferase, putative, expressed K00679: phospholipid:diacylglycerol acyltransferase
15 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
16 Sobic.002G211800 AT-rich interaction region, putative, expressed -
17 Sobic.004G086700 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
18 Sobic.004G294700 F-box family protein, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
19 Sobic.004G253100 armadillo/beta-catenin repeat family protein, putative, expressed -
20 Sobic.004G185800 expressed protein -


Gene co-expression network
sample Sobic009G002300 Sobic009G002300 Sobic002G148750 Sobic002G148750 Sobic009G002300--Sobic002G148750 Sobic009G129100 Sobic009G129100 Sobic009G002300--Sobic009G129100 Sobic003G168100 Sobic003G168100 Sobic009G002300--Sobic003G168100 Sobic008G088806 Sobic008G088806 Sobic009G002300--Sobic008G088806 Sobic006G031800 Sobic006G031800 Sobic009G002300--Sobic006G031800 Sobic001G145000 Sobic001G145000 Sobic009G002300--Sobic001G145000 Sobic007G136800 Sobic007G136800 Sobic009G002300--Sobic007G136800 Sobic005G059800 Sobic005G059800 Sobic009G002300--Sobic005G059800 Sobic010G140400 Sobic010G140400 Sobic009G002300--Sobic010G140400 Sobic002G148750--Sobic009G002300 Sobic003G217900 Sobic003G217900 Sobic002G148750--Sobic003G217900 Sobic003G155300 Sobic003G155300 Sobic002G148750--Sobic003G155300 Sobic002G148750--Sobic009G129100 Sobic003G217700 Sobic003G217700 Sobic002G148750--Sobic003G217700 Sobic009G132700 Sobic009G132700 Sobic002G148750--Sobic009G132700 Sobic007G159900 Sobic007G159900 Sobic002G148750--Sobic007G159900 Sobic002G148750--Sobic010G140400 Sobic002G148750--Sobic007G136800 Sobic009G129100--Sobic003G168100 Sobic005G167700 Sobic005G167700 Sobic009G129100--Sobic005G167700 Sobic003G067100 Sobic003G067100 Sobic009G129100--Sobic003G067100 Sobic010G126000 Sobic010G126000 Sobic009G129100--Sobic010G126000 Sobic003G234900 Sobic003G234900 Sobic009G129100--Sobic003G234900 Sobic003G120300 Sobic003G120300 Sobic009G129100--Sobic003G120300 Sobic001G275300 Sobic001G275300 Sobic009G129100--Sobic001G275300 Sobic004G185800 Sobic004G185800 Sobic009G129100--Sobic004G185800 Sobic009G129100--Sobic009G132700 Sobic003G168100--Sobic010G126000 Sobic003G168100--Sobic005G167700 Sobic003G168100--Sobic009G129100 Sobic008G044100 Sobic008G044100 Sobic003G168100--Sobic008G044100 Sobic001G433800 Sobic001G433800 Sobic003G168100--Sobic001G433800 Sobic003G398700 Sobic003G398700 Sobic003G168100--Sobic003G398700 Sobic004G244900 Sobic004G244900 Sobic003G168100--Sobic004G244900 Sobic004G134200 Sobic004G134200 Sobic003G168100--Sobic004G134200 Sobic003G168100--Sobic004G185800 Sobic001G251100 Sobic001G251100 Sobic008G088806--Sobic001G251100 Sobic002G133300 Sobic002G133300 Sobic008G088806--Sobic002G133300 Sobic008G070800 Sobic008G070800 Sobic008G088806--Sobic008G070800 Sobic003G176000 Sobic003G176000 Sobic008G088806--Sobic003G176000 Sobic008G088806--Sobic009G132700 Sobic001G333100 Sobic001G333100 Sobic008G088806--Sobic001G333100 Sobic009G251500 Sobic009G251500 Sobic008G088806--Sobic009G251500 Sobic009G256900 Sobic009G256900 Sobic008G088806--Sobic009G256900 Sobic008G088806--Sobic009G002300 Sobic009G215500 Sobic009G215500 Sobic006G031800--Sobic009G215500 Sobic001G465700 Sobic001G465700 Sobic006G031800--Sobic001G465700 Sobic006G031800--Sobic007G136800 Sobic006G031800--Sobic003G168100 Sobic006G031800--Sobic003G217700 Sobic003G110800 Sobic003G110800 Sobic006G031800--Sobic003G110800 Sobic006G128300 Sobic006G128300 Sobic006G031800--Sobic006G128300 Sobic006G038500 Sobic006G038500 Sobic006G031800--Sobic006G038500 Sobic002G218500 Sobic002G218500 Sobic006G031800--Sobic002G218500 Sobic002G424700 Sobic002G424700 Sobic001G145000--Sobic002G424700 Sobic004G334300 Sobic004G334300 Sobic001G145000--Sobic004G334300 Sobic002G275700 Sobic002G275700 Sobic001G145000--Sobic002G275700 Sobic001G145000--Sobic004G244900 Sobic005G142800 Sobic005G142800 Sobic001G145000--Sobic005G142800 Sobic007G103100 Sobic007G103100 Sobic001G145000--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic001G145000--Sobic001G527800 Sobic010G123600 Sobic010G123600 Sobic001G145000--Sobic010G123600 Sobic002G316600 Sobic002G316600 Sobic001G145000--Sobic002G316600 Sobic007G136800--Sobic003G398700 Sobic007G136800--Sobic010G126000 Sobic007G136800--Sobic003G168100 Sobic001G375700 Sobic001G375700 Sobic007G136800--Sobic001G375700 Sobic007G136800--Sobic006G031800 Sobic005G100600 Sobic005G100600 Sobic007G136800--Sobic005G100600 Sobic001G043800 Sobic001G043800 Sobic007G136800--Sobic001G043800 Sobic003G011300 Sobic003G011300 Sobic007G136800--Sobic003G011300 Sobic010G032900 Sobic010G032900 Sobic007G136800--Sobic010G032900 Sobic005G059800--Sobic010G032900 Sobic002G294800 Sobic002G294800 Sobic005G059800--Sobic002G294800 Sobic006G185100 Sobic006G185100 Sobic005G059800--Sobic006G185100 Sobic001G194200 Sobic001G194200 Sobic005G059800--Sobic001G194200 Sobic003G155100 Sobic003G155100 Sobic005G059800--Sobic003G155100 Sobic005G059800--Sobic003G011300 Sobic005G059800--Sobic008G044100 Sobic005G059800--Sobic008G070800 Sobic005G059800--Sobic003G398700 Sobic010G145800 Sobic010G145800 Sobic010G140400--Sobic010G145800 Sobic001G493200 Sobic001G493200 Sobic010G140400--Sobic001G493200 Sobic001G219600 Sobic001G219600 Sobic010G140400--Sobic001G219600 Sobic006G234700 Sobic006G234700 Sobic010G140400--Sobic006G234700 Sobic007G203200 Sobic007G203200 Sobic010G140400--Sobic007G203200 Sobic003G443100 Sobic003G443100 Sobic010G140400--Sobic003G443100 Sobic008G162900 Sobic008G162900 Sobic010G140400--Sobic008G162900 Sobic010G279450 Sobic010G279450 Sobic010G140400--Sobic010G279450 Sobic001G227200 Sobic001G227200 Sobic010G140400--Sobic001G227200
Octagon: transcription factors


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