Gene annotation
Transcriptome id Sobic.008G088806.1
Synonym -
Functional annotation -
UniProt A0A125QUJ5 , A0A1Z5R5F9 , C6JRM2 , A0A125QUJ4
Pfam PF07002
Panther DB PTHR10857 PTHR10857:SF28
NCBI CDD -
KEGG Orthology K16280; E3 ubiquitin-protein ligase RGLG
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G14420 : RING domain ligase2
RAP-DB (Rice) LOC_Os12g19030.1 : copine, putative, expressed
MaizeGDB (Corn) Zm00025a024905
Brachypodium KQJ91668
Barley HORVU5Hr1G039100.14 , HORVU5Hr1G039100.15 , HORVU5Hr1G039100.17 , HORVU5Hr1G039100.10 , HORVU5Hr1G039100.11 , HORVU5Hr1G039100.12 , HORVU5Hr1G039100.13 , HORVU5Hr1G039100.18 , HORVU5Hr1G039100.19 , HORVU5Hr1G039100.21 , HORVU5Hr1G039100.20 , HORVU5Hr1G039100.23 , HORVU5Hr1G039100.22 , HORVU5Hr1G039100.25 , HORVU5Hr1G039100.24 , HORVU5Hr1G039100.8 , HORVU5Hr1G039100.9 , HORVU5Hr1G039100.6 , HORVU5Hr1G039100.7 , HORVU5Hr1G039100.4 , HORVU5Hr1G039100.5 , HORVU5Hr1G039100.2 , HORVU5Hr1G039100.3 , HORVU5Hr1G039100.1
Wheat TraesCS5D02G122000 , TraesCS5A02G103800 , TraesCS5A02G103800 , TraesCS5B02G111900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
2 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
3 Sobic.008G070800 expressed protein -
4 Sobic.003G176000 lipase family protein, putative, expressed -
5 Sobic.009G132700 - -
6 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
7 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
8 Sobic.009G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.009G002300 expressed protein -
10 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
11 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
12 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
13 Sobic.004G136300 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
14 Sobic.001G355800 methyltransferase, putative, expressed -
15 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
16 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
17 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
18 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
19 Sobic.008G053300 CAMK_CAMK_like.45 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
20 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85


Gene co-expression network
sample Sobic008G088806 Sobic008G088806 Sobic001G251100 Sobic001G251100 Sobic008G088806--Sobic001G251100 Sobic002G133300 Sobic002G133300 Sobic008G088806--Sobic002G133300 Sobic008G070800 Sobic008G070800 Sobic008G088806--Sobic008G070800 Sobic003G176000 Sobic003G176000 Sobic008G088806--Sobic003G176000 Sobic009G132700 Sobic009G132700 Sobic008G088806--Sobic009G132700 Sobic001G333100 Sobic001G333100 Sobic008G088806--Sobic001G333100 Sobic009G251500 Sobic009G251500 Sobic008G088806--Sobic009G251500 Sobic009G256900 Sobic009G256900 Sobic008G088806--Sobic009G256900 Sobic009G002300 Sobic009G002300 Sobic008G088806--Sobic009G002300 Sobic003G104000 Sobic003G104000 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic001G251100--Sobic002G133300 Sobic003G293300 Sobic003G293300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic004G276400 Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic001G080700 Sobic001G080700 Sobic008G070800--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic008G070800--Sobic001G392300 Sobic006G185100 Sobic006G185100 Sobic008G070800--Sobic006G185100 Sobic005G059800 Sobic005G059800 Sobic008G070800--Sobic005G059800 Sobic001G151100 Sobic001G151100 Sobic008G070800--Sobic001G151100 Sobic002G047700 Sobic002G047700 Sobic008G070800--Sobic002G047700 Sobic002G294800 Sobic002G294800 Sobic008G070800--Sobic002G294800 Sobic008G070800--Sobic001G333100 Sobic002G383800 Sobic002G383800 Sobic008G070800--Sobic002G383800 Sobic004G131800 Sobic004G131800 Sobic003G176000--Sobic004G131800 Sobic002G344000 Sobic002G344000 Sobic003G176000--Sobic002G344000 Sobic002G211800 Sobic002G211800 Sobic003G176000--Sobic002G211800 Sobic002G170200 Sobic002G170200 Sobic003G176000--Sobic002G170200 Sobic010G032900 Sobic010G032900 Sobic003G176000--Sobic010G032900 Sobic003G253600 Sobic003G253600 Sobic003G176000--Sobic003G253600 Sobic002G325300 Sobic002G325300 Sobic003G176000--Sobic002G325300 Sobic003G176000--Sobic002G294800 Sobic003G176000--Sobic005G059800 Sobic005G027400 Sobic005G027400 Sobic009G132700--Sobic005G027400 Sobic004G140600 Sobic004G140600 Sobic009G132700--Sobic004G140600 Sobic003G170900 Sobic003G170900 Sobic009G132700--Sobic003G170900 Sobic001G455600 Sobic001G455600 Sobic009G132700--Sobic001G455600 Sobic009G132700--Sobic002G211800 Sobic006G252900 Sobic006G252900 Sobic009G132700--Sobic006G252900 Sobic009G132700--Sobic001G433800 Sobic001G111850 Sobic001G111850 Sobic009G132700--Sobic001G111850 Sobic003G188400 Sobic003G188400 Sobic009G132700--Sobic003G188400 Sobic003G264100 Sobic003G264100 Sobic001G333100--Sobic003G264100 Sobic002G020700 Sobic002G020700 Sobic001G333100--Sobic002G020700 Sobic003G221400 Sobic003G221400 Sobic001G333100--Sobic003G221400 Sobic001G192000 Sobic001G192000 Sobic001G333100--Sobic001G192000 Sobic010G020400 Sobic010G020400 Sobic001G333100--Sobic010G020400 Sobic002G142900 Sobic002G142900 Sobic001G333100--Sobic002G142900 Sobic010G223300 Sobic010G223300 Sobic001G333100--Sobic010G223300 Sobic001G333100--Sobic001G251100 Sobic008G033500 Sobic008G033500 Sobic001G333100--Sobic008G033500 Sobic004G242400 Sobic004G242400 Sobic009G251500--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic009G251500--Sobic003G389200 Sobic009G256300 Sobic009G256300 Sobic009G251500--Sobic009G256300 Sobic003G360400 Sobic003G360400 Sobic009G251500--Sobic003G360400 Sobic001G230000 Sobic001G230000 Sobic009G251500--Sobic001G230000 Sobic010G010700 Sobic010G010700 Sobic009G251500--Sobic010G010700 Sobic009G251500--Sobic004G276400 Sobic009G251500--Sobic002G133300 Sobic001G457900 Sobic001G457900 Sobic009G251500--Sobic001G457900 Sobic009G256900--Sobic001G493700 Sobic009G256900--Sobic002G133300 Sobic003G441900 Sobic003G441900 Sobic009G256900--Sobic003G441900 Sobic006G127600 Sobic006G127600 Sobic009G256900--Sobic006G127600 Sobic001G002000 Sobic001G002000 Sobic009G256900--Sobic001G002000 Sobic003G095900 Sobic003G095900 Sobic009G256900--Sobic003G095900 Sobic009G256900--Sobic003G221400 Sobic001G089600 Sobic001G089600 Sobic009G256900--Sobic001G089600 Sobic006G184900 Sobic006G184900 Sobic009G256900--Sobic006G184900 Sobic002G148750 Sobic002G148750 Sobic009G002300--Sobic002G148750 Sobic009G129100 Sobic009G129100 Sobic009G002300--Sobic009G129100 Sobic003G168100 Sobic003G168100 Sobic009G002300--Sobic003G168100 Sobic009G002300--Sobic008G088806 Sobic006G031800 Sobic006G031800 Sobic009G002300--Sobic006G031800 Sobic001G145000 Sobic001G145000 Sobic009G002300--Sobic001G145000 Sobic007G136800 Sobic007G136800 Sobic009G002300--Sobic007G136800 Sobic009G002300--Sobic005G059800 Sobic010G140400 Sobic010G140400 Sobic009G002300--Sobic010G140400
Octagon: transcription factors


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