Gene annotation
Transcriptome id Sobic.004G086700.1
Synonym Sb04g007180
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XXY1
Pfam PF00400
Panther DB PTHR19877
NCBI CDD -
KEGG Orthology K13137; STRAP, serine-threonine kinase receptor-associated protein
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G52730 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os06g39760.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051235
Brachypodium KQK17804
Barley HORVU7Hr1G084630.4 , HORVU7Hr1G084630.2 , HORVU7Hr1G084630.1 , HORVU5Hr1G058430.1
Wheat TraesCS7A02G372500 , TraesCS7A02G372500 , TraesCS7D02G350400 , TraesCS5B02G194400 , TraesCS5A02G189200 , TraesCS5A02G189200 , TraesCS5D02G201800 , TraesCS7B02G254800
Populus -


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cDNA sequences
Sobic.004G086700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
2 Sobic.001G069600 ad-003, putative, expressed K16219: NTMT1, METTL11A, protein N-terminal methyltransferase
3 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
4 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
5 Sobic.010G186000 expressed protein -
6 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
7 Sobic.009G002300 expressed protein -
8 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
9 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
10 Sobic.001G120500 toc64, putative, expressed -
11 Sobic.002G083900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
12 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
13 Sobic.001G501300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
14 Sobic.007G062500 expressed protein -
15 Sobic.008G088806 - K16280: E3 ubiquitin-protein ligase RGLG
16 Sobic.008G070800 expressed protein -
17 Sobic.002G009200 - K15456: protein KTI12
18 Sobic.004G077600 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
19 Sobic.004G171200 WD domain, G-beta repeat domain containing protein, expressed K13124: mitogen-activated protein kinase organizer 1
20 Sobic.002G091600 methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic004G086700 Sobic004G086700 Sobic001G043800 Sobic001G043800 Sobic004G086700--Sobic001G043800 Sobic001G069600 Sobic001G069600 Sobic004G086700--Sobic001G069600 Sobic008G051200 Sobic008G051200 Sobic004G086700--Sobic008G051200 Sobic010G265300 Sobic010G265300 Sobic004G086700--Sobic010G265300 Sobic010G186000 Sobic010G186000 Sobic004G086700--Sobic010G186000 Sobic007G136800 Sobic007G136800 Sobic004G086700--Sobic007G136800 Sobic009G002300 Sobic009G002300 Sobic004G086700--Sobic009G002300 Sobic003G122500 Sobic003G122500 Sobic004G086700--Sobic003G122500 Sobic002G166300 Sobic002G166300 Sobic004G086700--Sobic002G166300 Sobic001G043800--Sobic007G136800 Sobic006G130800 Sobic006G130800 Sobic001G043800--Sobic006G130800 Sobic001G043800--Sobic004G086700 Sobic002G218500 Sobic002G218500 Sobic001G043800--Sobic002G218500 Sobic001G102500 Sobic001G102500 Sobic001G043800--Sobic001G102500 Sobic006G031800 Sobic006G031800 Sobic001G043800--Sobic006G031800 Sobic007G029700 Sobic007G029700 Sobic001G043800--Sobic007G029700 Sobic001G053000 Sobic001G053000 Sobic001G043800--Sobic001G053000 Sobic002G431300 Sobic002G431300 Sobic001G043800--Sobic002G431300 Sobic001G069600--Sobic004G086700 Sobic002G404200 Sobic002G404200 Sobic001G069600--Sobic002G404200 Sobic001G069600--Sobic010G265300 Sobic002G083900 Sobic002G083900 Sobic001G069600--Sobic002G083900 Sobic001G069600--Sobic001G043800 Sobic003G324100 Sobic003G324100 Sobic001G069600--Sobic003G324100 Sobic008G193300 Sobic008G193300 Sobic001G069600--Sobic008G193300 Sobic004G265900 Sobic004G265900 Sobic001G069600--Sobic004G265900 Sobic001G429300 Sobic001G429300 Sobic001G069600--Sobic001G429300 Sobic004G171200 Sobic004G171200 Sobic008G051200--Sobic004G171200 Sobic001G251100 Sobic001G251100 Sobic008G051200--Sobic001G251100 Sobic006G125900 Sobic006G125900 Sobic008G051200--Sobic006G125900 Sobic004G185800 Sobic004G185800 Sobic008G051200--Sobic004G185800 Sobic001G493200 Sobic001G493200 Sobic008G051200--Sobic001G493200 Sobic001G089600 Sobic001G089600 Sobic008G051200--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic008G051200--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic008G051200--Sobic001G393900 Sobic004G030800 Sobic004G030800 Sobic008G051200--Sobic004G030800 Sobic001G120500 Sobic001G120500 Sobic010G265300--Sobic001G120500 Sobic005G160400 Sobic005G160400 Sobic010G265300--Sobic005G160400 Sobic010G092300 Sobic010G092300 Sobic010G265300--Sobic010G092300 Sobic005G172500 Sobic005G172500 Sobic010G265300--Sobic005G172500 Sobic008G076800 Sobic008G076800 Sobic010G265300--Sobic008G076800 Sobic004G092500 Sobic004G092500 Sobic010G265300--Sobic004G092500 Sobic007G084100 Sobic007G084100 Sobic010G265300--Sobic007G084100 Sobic004G257100 Sobic004G257100 Sobic010G265300--Sobic004G257100 Sobic001G226700 Sobic001G226700 Sobic010G265300--Sobic001G226700 Sobic008G070800 Sobic008G070800 Sobic010G186000--Sobic008G070800 Sobic010G186000--Sobic004G086700 Sobic002G091600 Sobic002G091600 Sobic010G186000--Sobic002G091600 Sobic010G186000--Sobic007G136800 Sobic002G383800 Sobic002G383800 Sobic010G186000--Sobic002G383800 Sobic009G084500 Sobic009G084500 Sobic010G186000--Sobic009G084500 Sobic004G040900 Sobic004G040900 Sobic010G186000--Sobic004G040900 Sobic002G131200 Sobic002G131200 Sobic010G186000--Sobic002G131200 Sobic003G110800 Sobic003G110800 Sobic010G186000--Sobic003G110800 Sobic003G398700 Sobic003G398700 Sobic007G136800--Sobic003G398700 Sobic010G126000 Sobic010G126000 Sobic007G136800--Sobic010G126000 Sobic003G168100 Sobic003G168100 Sobic007G136800--Sobic003G168100 Sobic001G375700 Sobic001G375700 Sobic007G136800--Sobic001G375700 Sobic007G136800--Sobic006G031800 Sobic005G100600 Sobic005G100600 Sobic007G136800--Sobic005G100600 Sobic007G136800--Sobic001G043800 Sobic003G011300 Sobic003G011300 Sobic007G136800--Sobic003G011300 Sobic010G032900 Sobic010G032900 Sobic007G136800--Sobic010G032900 Sobic002G148750 Sobic002G148750 Sobic009G002300--Sobic002G148750 Sobic009G129100 Sobic009G129100 Sobic009G002300--Sobic009G129100 Sobic009G002300--Sobic003G168100 Sobic008G088806 Sobic008G088806 Sobic009G002300--Sobic008G088806 Sobic009G002300--Sobic006G031800 Sobic001G145000 Sobic001G145000 Sobic009G002300--Sobic001G145000 Sobic009G002300--Sobic007G136800 Sobic005G059800 Sobic005G059800 Sobic009G002300--Sobic005G059800 Sobic010G140400 Sobic010G140400 Sobic009G002300--Sobic010G140400 Sobic003G122500--Sobic007G084100 Sobic003G122500--Sobic005G160400 Sobic003G123000 Sobic003G123000 Sobic003G122500--Sobic003G123000 Sobic001G241100 Sobic001G241100 Sobic003G122500--Sobic001G241100 Sobic001G119900 Sobic001G119900 Sobic003G122500--Sobic001G119900 Sobic010G171100 Sobic010G171100 Sobic003G122500--Sobic010G171100 Sobic002G047700 Sobic002G047700 Sobic003G122500--Sobic002G047700 Sobic006G199200 Sobic006G199200 Sobic003G122500--Sobic006G199200 Sobic003G122500--Sobic004G257100 Sobic003G273600 Sobic003G273600 Sobic002G166300--Sobic003G273600 Sobic003G233600 Sobic003G233600 Sobic002G166300--Sobic003G233600 Sobic009G139900 Sobic009G139900 Sobic002G166300--Sobic009G139900 Sobic004G296400 Sobic004G296400 Sobic002G166300--Sobic004G296400 Sobic001G079200 Sobic001G079200 Sobic002G166300--Sobic001G079200 Sobic009G199200 Sobic009G199200 Sobic002G166300--Sobic009G199200 Sobic008G004600 Sobic008G004600 Sobic002G166300--Sobic008G004600 Sobic001G000200 Sobic001G000200 Sobic002G166300--Sobic001G000200 Sobic004G136300 Sobic004G136300 Sobic002G166300--Sobic004G136300
Octagon: transcription factors


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