Gene annotation
Transcriptome id Sobic.007G062500.1
Synonym Sb07g004990
Functional annotation expressed protein
UniProt C5YHY0
Pfam -
Panther DB PTHR33625 PTHR33625:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G54540 : Uncharacterised conserved protein (UCP012943)
RAP-DB (Rice) LOC_Os08g08190.1 : expressed protein
MaizeGDB (Corn) Zm00025a054763 , Zm00025a029999
Brachypodium KQJ95149 , KQJ95148
Barley -
Wheat TraesCS7B02G288500 , TraesCS7A02G385600 , TraesCS7D02G382200 , TraesCS7D02G382200 , TraesCS7D02G382200 , TraesCS7D02G382200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G062500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
2 Sobic.001G427500 B4-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
3 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
4 Sobic.004G086700 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
5 Sobic.010G184600 Homologous to Arabidopsis heme oxygenase 1 (AtHO1)(PubMedID : 11402195)@heme oxygenase 1, putative, expressed K00510: heme oxygenase 1
6 Sobic.009G094800 sugar porter, putative, expressed -
7 Sobic.001G053000 small multi-drug export protein, putative, expressed -
8 Sobic.004G174400 ZOS2-09 - C2H2 zinc finger protein, expressed -
9 Sobic.009G190800 thioredoxin, putative, expressed K03671: thioredoxin 1
10 Sobic.010G277100 regulator of ribonuclease, putative, expressed -
11 Sobic.006G028300 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
12 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
13 Sobic.007G078500 serine/threonine-protein kinase HT1, putative, expressed -
14 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
15 Sobic.002G351900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
16 Sobic.001G261597 - K07904: Ras-related protein Rab-11A
17 Sobic.001G429300 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13414: mitogen-activated protein kinase kinase kinase 1
18 Sobic.004G189900 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed K13418: somatic embryogenesis receptor kinase 1
19 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
20 Sobic.003G308700 BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1


Gene co-expression network
sample Sobic007G062500 Sobic007G062500 Sobic001G043800 Sobic001G043800 Sobic007G062500--Sobic001G043800 Sobic001G427500 Sobic001G427500 Sobic007G062500--Sobic001G427500 Sobic004G227300 Sobic004G227300 Sobic007G062500--Sobic004G227300 Sobic004G086700 Sobic004G086700 Sobic007G062500--Sobic004G086700 Sobic010G184600 Sobic010G184600 Sobic007G062500--Sobic010G184600 Sobic009G094800 Sobic009G094800 Sobic007G062500--Sobic009G094800 Sobic001G053000 Sobic001G053000 Sobic007G062500--Sobic001G053000 Sobic004G174400 Sobic004G174400 Sobic007G062500--Sobic004G174400 Sobic009G190800 Sobic009G190800 Sobic007G062500--Sobic009G190800 Sobic007G136800 Sobic007G136800 Sobic001G043800--Sobic007G136800 Sobic006G130800 Sobic006G130800 Sobic001G043800--Sobic006G130800 Sobic001G043800--Sobic004G086700 Sobic002G218500 Sobic002G218500 Sobic001G043800--Sobic002G218500 Sobic001G102500 Sobic001G102500 Sobic001G043800--Sobic001G102500 Sobic006G031800 Sobic006G031800 Sobic001G043800--Sobic006G031800 Sobic007G029700 Sobic007G029700 Sobic001G043800--Sobic007G029700 Sobic001G043800--Sobic001G053000 Sobic002G431300 Sobic002G431300 Sobic001G043800--Sobic002G431300 Sobic002G339500 Sobic002G339500 Sobic001G427500--Sobic002G339500 Sobic002G193400 Sobic002G193400 Sobic001G427500--Sobic002G193400 Sobic001G427500--Sobic004G227300 Sobic006G004600 Sobic006G004600 Sobic001G427500--Sobic006G004600 Sobic001G427500--Sobic007G062500 Sobic001G417900 Sobic001G417900 Sobic001G427500--Sobic001G417900 Sobic009G017400 Sobic009G017400 Sobic001G427500--Sobic009G017400 Sobic001G261597 Sobic001G261597 Sobic001G427500--Sobic001G261597 Sobic001G022600 Sobic001G022600 Sobic001G427500--Sobic001G022600 Sobic004G227300--Sobic001G427500 Sobic004G227300--Sobic001G261597 Sobic006G171700 Sobic006G171700 Sobic004G227300--Sobic006G171700 Sobic003G359900 Sobic003G359900 Sobic004G227300--Sobic003G359900 Sobic003G299000 Sobic003G299000 Sobic004G227300--Sobic003G299000 Sobic004G214100 Sobic004G214100 Sobic004G227300--Sobic004G214100 Sobic002G259400 Sobic002G259400 Sobic004G227300--Sobic002G259400 Sobic004G227300--Sobic007G062500 Sobic006G119800 Sobic006G119800 Sobic004G227300--Sobic006G119800 Sobic004G086700--Sobic001G043800 Sobic001G069600 Sobic001G069600 Sobic004G086700--Sobic001G069600 Sobic008G051200 Sobic008G051200 Sobic004G086700--Sobic008G051200 Sobic010G265300 Sobic010G265300 Sobic004G086700--Sobic010G265300 Sobic010G186000 Sobic010G186000 Sobic004G086700--Sobic010G186000 Sobic004G086700--Sobic007G136800 Sobic009G002300 Sobic009G002300 Sobic004G086700--Sobic009G002300 Sobic003G122500 Sobic003G122500 Sobic004G086700--Sobic003G122500 Sobic002G166300 Sobic002G166300 Sobic004G086700--Sobic002G166300 Sobic008G146900 Sobic008G146900 Sobic010G184600--Sobic008G146900 Sobic006G258700 Sobic006G258700 Sobic010G184600--Sobic006G258700 Sobic001G351400 Sobic001G351400 Sobic010G184600--Sobic001G351400 Sobic003G014300 Sobic003G014300 Sobic010G184600--Sobic003G014300 Sobic003G343400 Sobic003G343400 Sobic010G184600--Sobic003G343400 Sobic001G418700 Sobic001G418700 Sobic010G184600--Sobic001G418700 Sobic003G007700 Sobic003G007700 Sobic010G184600--Sobic003G007700 Sobic009G034600 Sobic009G034600 Sobic010G184600--Sobic009G034600 Sobic004G189900 Sobic004G189900 Sobic010G184600--Sobic004G189900 Sobic002G040800 Sobic002G040800 Sobic009G094800--Sobic002G040800 Sobic002G174900 Sobic002G174900 Sobic009G094800--Sobic002G174900 Sobic003G308700 Sobic003G308700 Sobic009G094800--Sobic003G308700 Sobic001G429300 Sobic001G429300 Sobic009G094800--Sobic001G429300 Sobic009G094800--Sobic007G062500 Sobic008G081150 Sobic008G081150 Sobic009G094800--Sobic008G081150 Sobic009G094800--Sobic001G427500 Sobic006G028300 Sobic006G028300 Sobic009G094800--Sobic006G028300 Sobic001G031300 Sobic001G031300 Sobic009G094800--Sobic001G031300 Sobic001G053000--Sobic001G043800 Sobic010G277100 Sobic010G277100 Sobic001G053000--Sobic010G277100 Sobic002G343400 Sobic002G343400 Sobic001G053000--Sobic002G343400 Sobic003G314500 Sobic003G314500 Sobic001G053000--Sobic003G314500 Sobic001G053000--Sobic007G062500 Sobic008G144800 Sobic008G144800 Sobic001G053000--Sobic008G144800 Sobic002G281800 Sobic002G281800 Sobic001G053000--Sobic002G281800 Sobic001G053000--Sobic001G417900 Sobic010G140600 Sobic010G140600 Sobic001G053000--Sobic010G140600 Sobic007G108500 Sobic007G108500 Sobic004G174400--Sobic007G108500 Sobic004G164400 Sobic004G164400 Sobic004G174400--Sobic004G164400 Sobic006G228500 Sobic006G228500 Sobic004G174400--Sobic006G228500 Sobic004G174400--Sobic007G136800 Sobic001G375700 Sobic001G375700 Sobic004G174400--Sobic001G375700 Sobic001G035900 Sobic001G035900 Sobic004G174400--Sobic001G035900 Sobic002G031400 Sobic002G031400 Sobic004G174400--Sobic002G031400 Sobic010G176550 Sobic010G176550 Sobic004G174400--Sobic010G176550 Sobic010G005600 Sobic010G005600 Sobic004G174400--Sobic010G005600 Sobic001G341800 Sobic001G341800 Sobic009G190800--Sobic001G341800 Sobic009G190800--Sobic001G022600 Sobic009G190800--Sobic003G359900 Sobic003G103200 Sobic003G103200 Sobic009G190800--Sobic003G103200 Sobic009G190800--Sobic004G214100 Sobic009G190800--Sobic002G281800 Sobic005G072200 Sobic005G072200 Sobic009G190800--Sobic005G072200 Sobic001G416300 Sobic001G416300 Sobic009G190800--Sobic001G416300 Sobic007G168200 Sobic007G168200 Sobic009G190800--Sobic007G168200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.