Gene annotation
Transcriptome id Sobic.006G028300.1
Synonym Sb06g002900
Functional annotation 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed
UniProt C5YCV2
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF123
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G06620 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os04g10350.1 : 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed
MaizeGDB (Corn) Zm00025a055609
Brachypodium KQJ81456 , KQJ81457
Barley HORVU2Hr1G004200.2 , HORVU2Hr1G004200.4 , HORVU2Hr1G004200.3 , HORVU2Hr1G004200.1 , HORVU0Hr1G040020.2 , HORVU0Hr1G040020.1 , HORVU0Hr1G040020.3 , HORVU2Hr1G004180.1 , HORVU2Hr1G003940.4 , HORVU2Hr1G003940.5 , HORVU2Hr1G003940.1 , HORVU2Hr1G003940.2 , HORVU2Hr1G003940.3 , HORVU2Hr1G003900.1
Wheat TraesCS3B02G508500 , TraesCS3B02G508500 , TraesCS2D02G028000 , TraesCS2D02G027600 , TraesCS2D02G027600 , TraesCS2B02G038500 , TraesCS2A02G026500 , TraesCS2A02G025900 , TraesCS2A02G025800 , TraesCS2D02G028700 , TraesCS2D02G028700
Populus -


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cDNA sequences
Sobic.006G028300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -
2 Sobic.004G021200 expressed protein -
3 Sobic.009G232700 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
4 Sobic.006G273200 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@protein kinase family protein, putative, expressed K14500: BR-signaling kinase
5 Sobic.010G280100 expressed protein -
6 Sobic.002G092300 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1
8 Sobic.010G268300 protein phosphatase 2C, putative, expressed -
9 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
10 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
11 Sobic.009G094800 sugar porter, putative, expressed -
12 Sobic.002G309800 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
13 Sobic.001G429300 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13414: mitogen-activated protein kinase kinase kinase 1
14 Sobic.001G131800 expressed protein K15186: ELL-associated factor
15 Sobic.002G156200 DUF565 domain containing protein, putative, expressed -
16 Sobic.007G062500 expressed protein -
17 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
18 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
19 Sobic.002G351900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
20 Sobic.001G418800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-acetylglucosaminyltransferase, putative, expressed -


Gene co-expression network
sample Sobic006G028300 Sobic006G028300 Sobic007G115200 Sobic007G115200 Sobic006G028300--Sobic007G115200 Sobic004G021200 Sobic004G021200 Sobic006G028300--Sobic004G021200 Sobic009G232700 Sobic009G232700 Sobic006G028300--Sobic009G232700 Sobic006G273200 Sobic006G273200 Sobic006G028300--Sobic006G273200 Sobic010G280100 Sobic010G280100 Sobic006G028300--Sobic010G280100 Sobic002G092300 Sobic002G092300 Sobic006G028300--Sobic002G092300 Sobic002G399100 Sobic002G399100 Sobic006G028300--Sobic002G399100 Sobic010G268300 Sobic010G268300 Sobic006G028300--Sobic010G268300 Sobic008G103200 Sobic008G103200 Sobic006G028300--Sobic008G103200 Sobic001G107500 Sobic001G107500 Sobic007G115200--Sobic001G107500 Sobic001G016000 Sobic001G016000 Sobic007G115200--Sobic001G016000 Sobic001G309400 Sobic001G309400 Sobic007G115200--Sobic001G309400 Sobic007G104800 Sobic007G104800 Sobic007G115200--Sobic007G104800 Sobic002G347000 Sobic002G347000 Sobic007G115200--Sobic002G347000 Sobic002G363600 Sobic002G363600 Sobic007G115200--Sobic002G363600 Sobic002G351900 Sobic002G351900 Sobic007G115200--Sobic002G351900 Sobic001G281600 Sobic001G281600 Sobic007G115200--Sobic001G281600 Sobic007G115200--Sobic002G092300 Sobic003G266001 Sobic003G266001 Sobic004G021200--Sobic003G266001 Sobic004G021200--Sobic008G103200 Sobic010G279700 Sobic010G279700 Sobic004G021200--Sobic010G279700 Sobic004G021200--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic004G021200--Sobic008G083000 Sobic004G021200--Sobic006G273200 Sobic005G106500 Sobic005G106500 Sobic004G021200--Sobic005G106500 Sobic007G096000 Sobic007G096000 Sobic004G021200--Sobic007G096000 Sobic002G310200 Sobic002G310200 Sobic004G021200--Sobic002G310200 Sobic009G232700--Sobic001G107500 Sobic003G298100 Sobic003G298100 Sobic009G232700--Sobic003G298100 Sobic009G022200 Sobic009G022200 Sobic009G232700--Sobic009G022200 Sobic008G175800 Sobic008G175800 Sobic009G232700--Sobic008G175800 Sobic007G205800 Sobic007G205800 Sobic009G232700--Sobic007G205800 Sobic001G368400 Sobic001G368400 Sobic009G232700--Sobic001G368400 Sobic001G131800 Sobic001G131800 Sobic009G232700--Sobic001G131800 Sobic003G324000 Sobic003G324000 Sobic009G232700--Sobic003G324000 Sobic010G056200 Sobic010G056200 Sobic009G232700--Sobic010G056200 Sobic001G497300 Sobic001G497300 Sobic006G273200--Sobic001G497300 Sobic009G065100 Sobic009G065100 Sobic006G273200--Sobic009G065100 Sobic004G205600 Sobic004G205600 Sobic006G273200--Sobic004G205600 Sobic006G273200--Sobic007G096000 Sobic009G233300 Sobic009G233300 Sobic006G273200--Sobic009G233300 Sobic008G062000 Sobic008G062000 Sobic006G273200--Sobic008G062000 Sobic006G237400 Sobic006G237400 Sobic006G273200--Sobic006G237400 Sobic006G273200--Sobic007G205800 Sobic003G176600 Sobic003G176600 Sobic006G273200--Sobic003G176600 Sobic009G198900 Sobic009G198900 Sobic010G280100--Sobic009G198900 Sobic004G119000 Sobic004G119000 Sobic010G280100--Sobic004G119000 Sobic010G280100--Sobic003G324000 Sobic007G052900 Sobic007G052900 Sobic010G280100--Sobic007G052900 Sobic008G136200 Sobic008G136200 Sobic010G280100--Sobic008G136200 Sobic009G087800 Sobic009G087800 Sobic010G280100--Sobic009G087800 Sobic010G280100--Sobic007G205800 Sobic010G280100--Sobic001G368400 Sobic010G280100--Sobic006G273200 Sobic002G092300--Sobic010G279700 Sobic004G250300 Sobic004G250300 Sobic002G092300--Sobic004G250300 Sobic002G092300--Sobic004G021200 Sobic002G092300--Sobic007G115200 Sobic008G092300 Sobic008G092300 Sobic002G092300--Sobic008G092300 Sobic002G092300--Sobic001G281600 Sobic001G000200 Sobic001G000200 Sobic002G092300--Sobic001G000200 Sobic003G250500 Sobic003G250500 Sobic002G092300--Sobic003G250500 Sobic002G092300--Sobic001G016000 Sobic001G413500 Sobic001G413500 Sobic002G399100--Sobic001G413500 Sobic002G399100--Sobic001G497300 Sobic001G512700 Sobic001G512700 Sobic002G399100--Sobic001G512700 Sobic002G399100--Sobic007G104800 Sobic002G399100--Sobic004G205600 Sobic002G399100--Sobic001G107500 Sobic002G399100--Sobic003G298100 Sobic010G153700 Sobic010G153700 Sobic002G399100--Sobic010G153700 Sobic003G029700 Sobic003G029700 Sobic002G399100--Sobic003G029700 Sobic010G268300--Sobic001G281600 Sobic002G122600 Sobic002G122600 Sobic010G268300--Sobic002G122600 Sobic010G268300--Sobic008G136200 Sobic003G401100 Sobic003G401100 Sobic010G268300--Sobic003G401100 Sobic009G215800 Sobic009G215800 Sobic010G268300--Sobic009G215800 Sobic004G246700 Sobic004G246700 Sobic010G268300--Sobic004G246700 Sobic010G268300--Sobic004G021200 Sobic007G009400 Sobic007G009400 Sobic010G268300--Sobic007G009400 Sobic010G268300--Sobic010G279700 Sobic008G047800 Sobic008G047800 Sobic008G103200--Sobic008G047800 Sobic008G103200--Sobic003G266001 Sobic004G065100 Sobic004G065100 Sobic008G103200--Sobic004G065100 Sobic001G222500 Sobic001G222500 Sobic008G103200--Sobic001G222500 Sobic010G069100 Sobic010G069100 Sobic008G103200--Sobic010G069100 Sobic008G103200--Sobic002G310200 Sobic004G084300 Sobic004G084300 Sobic008G103200--Sobic004G084300 Sobic001G154900 Sobic001G154900 Sobic008G103200--Sobic001G154900 Sobic004G072100 Sobic004G072100 Sobic008G103200--Sobic004G072100
Octagon: transcription factors


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