Gene annotation
Transcriptome id Sobic.009G232700.3,Sobic.009G232700.2,Sobic.009G232700.1
Synonym ATU2AF35B, Sb09g028530, U2AF35B
Functional annotation splicing factor U2AF, putative, expressed
UniProt C5YVK2
Pfam PF13893 PF00642
Panther DB PTHR12620 PTHR12620:SF15
NCBI CDD KOG2202; U2 snRNP splicing factor, small subunit, and related proteins
KEGG Orthology K12836; splicing factor U2AF 35 kDa subunit
Gene Ontology GO:0005634; nucleus GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G42820 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os05g48960.1,LOC_Os05g48960.2 : splicing factor U2AF, putative, expressed
MaizeGDB (Corn) Zm00025a036610 , Zm00025a044572 , Zm00025a016050 , Zm00025a025500
Brachypodium KQK04873 , KQK04871 , KQK04872 , KQK04874
Barley HORVU1Hr1G087660.15 , HORVU1Hr1G087660.16 , HORVU1Hr1G087660.17 , HORVU1Hr1G087660.10 , HORVU1Hr1G087660.11 , HORVU1Hr1G087660.12 , HORVU1Hr1G087660.13 , HORVU1Hr1G087660.18 , HORVU1Hr1G087660.19 , HORVU1Hr1G087660.21 , HORVU1Hr1G087660.20 , HORVU1Hr1G087660.23 , HORVU1Hr1G087660.22 , HORVU1Hr1G087660.8 , HORVU1Hr1G087660.9 , HORVU1Hr1G087660.6 , HORVU1Hr1G087660.7 , HORVU1Hr1G087660.4 , HORVU1Hr1G087660.5 , HORVU1Hr1G087660.2 , HORVU1Hr1G087660.3 , HORVU1Hr1G087660.1
Wheat TraesCS1D02G405300 , TraesCS1D02G405300 , TraesCS1D02G405300 , TraesCS1B02G425600 , TraesCS1A02G397300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G232700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
2 Sobic.003G298100 one zinc finger protein, putative, expressed -
3 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
4 Sobic.008G175800 methyl-CpG binding domain containing protein, putative, expressed -
5 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
6 Sobic.001G368400 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
7 Sobic.001G131800 expressed protein K15186: ELL-associated factor
8 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
9 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
10 Sobic.006G273200 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@protein kinase family protein, putative, expressed K14500: BR-signaling kinase
11 Sobic.006G109300 protein binding protein, putative, expressed -
12 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -
13 Sobic.007G152101 - K11982: E3 ubiquitin-protein ligase RNF115/126
14 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
15 Sobic.007G104800 expressed protein -
16 Sobic.010G280100 expressed protein -
17 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
18 Sobic.001G333200 RING zinc finger protein-like, putative, expressed -
19 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
20 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote


Gene co-expression network
sample Sobic009G232700 Sobic009G232700 Sobic001G107500 Sobic001G107500 Sobic009G232700--Sobic001G107500 Sobic003G298100 Sobic003G298100 Sobic009G232700--Sobic003G298100 Sobic009G022200 Sobic009G022200 Sobic009G232700--Sobic009G022200 Sobic008G175800 Sobic008G175800 Sobic009G232700--Sobic008G175800 Sobic007G205800 Sobic007G205800 Sobic009G232700--Sobic007G205800 Sobic001G368400 Sobic001G368400 Sobic009G232700--Sobic001G368400 Sobic001G131800 Sobic001G131800 Sobic009G232700--Sobic001G131800 Sobic003G324000 Sobic003G324000 Sobic009G232700--Sobic003G324000 Sobic010G056200 Sobic010G056200 Sobic009G232700--Sobic010G056200 Sobic002G320500 Sobic002G320500 Sobic001G107500--Sobic002G320500 Sobic006G133800 Sobic006G133800 Sobic001G107500--Sobic006G133800 Sobic002G157000 Sobic002G157000 Sobic001G107500--Sobic002G157000 Sobic009G065100 Sobic009G065100 Sobic001G107500--Sobic009G065100 Sobic001G090400 Sobic001G090400 Sobic001G107500--Sobic001G090400 Sobic001G107500--Sobic010G056200 Sobic001G497300 Sobic001G497300 Sobic001G107500--Sobic001G497300 Sobic007G104800 Sobic007G104800 Sobic001G107500--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic001G107500--Sobic004G205600 Sobic002G248400 Sobic002G248400 Sobic003G298100--Sobic002G248400 Sobic003G298100--Sobic002G157000 Sobic003G298100--Sobic004G205600 Sobic003G298100--Sobic001G107500 Sobic003G298100--Sobic002G320500 Sobic003G108700 Sobic003G108700 Sobic003G298100--Sobic003G108700 Sobic003G298100--Sobic007G104800 Sobic003G298100--Sobic001G497300 Sobic002G399100 Sobic002G399100 Sobic003G298100--Sobic002G399100 Sobic007G011400 Sobic007G011400 Sobic009G022200--Sobic007G011400 Sobic009G022200--Sobic007G205800 Sobic003G093600 Sobic003G093600 Sobic009G022200--Sobic003G093600 Sobic008G034600 Sobic008G034600 Sobic009G022200--Sobic008G034600 Sobic004G211400 Sobic004G211400 Sobic009G022200--Sobic004G211400 Sobic009G087800 Sobic009G087800 Sobic009G022200--Sobic009G087800 Sobic004G271900 Sobic004G271900 Sobic009G022200--Sobic004G271900 Sobic008G116500 Sobic008G116500 Sobic009G022200--Sobic008G116500 Sobic003G258400 Sobic003G258400 Sobic009G022200--Sobic003G258400 Sobic008G175800--Sobic009G232700 Sobic001G394400 Sobic001G394400 Sobic008G175800--Sobic001G394400 Sobic008G175800--Sobic003G298100 Sobic006G273200 Sobic006G273200 Sobic008G175800--Sobic006G273200 Sobic008G175800--Sobic002G157000 Sobic008G175800--Sobic009G087800 Sobic008G175800--Sobic007G205800 Sobic001G504000 Sobic001G504000 Sobic008G175800--Sobic001G504000 Sobic008G175800--Sobic002G248400 Sobic007G205800--Sobic007G011400 Sobic007G205800--Sobic009G087800 Sobic010G263800 Sobic010G263800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200 Sobic001G368400--Sobic003G324000 Sobic007G037900 Sobic007G037900 Sobic001G368400--Sobic007G037900 Sobic009G198900 Sobic009G198900 Sobic001G368400--Sobic009G198900 Sobic003G107800 Sobic003G107800 Sobic001G368400--Sobic003G107800 Sobic001G368400--Sobic003G258400 Sobic007G035600 Sobic007G035600 Sobic001G368400--Sobic007G035600 Sobic001G368400--Sobic007G205800 Sobic004G113800 Sobic004G113800 Sobic001G368400--Sobic004G113800 Sobic005G028400 Sobic005G028400 Sobic001G368400--Sobic005G028400 Sobic008G174300 Sobic008G174300 Sobic001G131800--Sobic008G174300 Sobic003G081000 Sobic003G081000 Sobic001G131800--Sobic003G081000 Sobic010G202600 Sobic010G202600 Sobic001G131800--Sobic010G202600 Sobic010G033400 Sobic010G033400 Sobic001G131800--Sobic010G033400 Sobic009G198100 Sobic009G198100 Sobic001G131800--Sobic009G198100 Sobic007G132400 Sobic007G132400 Sobic001G131800--Sobic007G132400 Sobic001G131800--Sobic001G107500 Sobic007G111100 Sobic007G111100 Sobic001G131800--Sobic007G111100 Sobic003G359300 Sobic003G359300 Sobic001G131800--Sobic003G359300 Sobic003G324000--Sobic009G198900 Sobic003G324000--Sobic001G368400 Sobic005G187200 Sobic005G187200 Sobic003G324000--Sobic005G187200 Sobic003G324000--Sobic010G056200 Sobic001G479500 Sobic001G479500 Sobic003G324000--Sobic001G479500 Sobic010G280100 Sobic010G280100 Sobic003G324000--Sobic010G280100 Sobic003G324000--Sobic007G205800 Sobic003G324000--Sobic009G087800 Sobic003G324000--Sobic003G258400 Sobic010G056200--Sobic001G107500 Sobic010G056200--Sobic004G113800 Sobic004G083700 Sobic004G083700 Sobic010G056200--Sobic004G083700 Sobic007G052900 Sobic007G052900 Sobic010G056200--Sobic007G052900 Sobic010G056200--Sobic003G324000 Sobic010G056200--Sobic009G065100 Sobic006G228500 Sobic006G228500 Sobic010G056200--Sobic006G228500 Sobic002G309800 Sobic002G309800 Sobic010G056200--Sobic002G309800 Sobic009G157200 Sobic009G157200 Sobic010G056200--Sobic009G157200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.