Gene annotation
Transcriptome id Sobic.008G175800.1
Synonym Sb08g022000, MBD10
Functional annotation methyl-CpG binding domain containing protein, putative, expressed
UniProt C5YSF0
Pfam PF01429
Panther DB PTHR33729
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G15340 : methyl-CPG-binding domain 10
RAP-DB (Rice) LOC_Os12g42550.1 : methyl-CpG binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a004734 , Zm00025a025137
Brachypodium KQJ88822
Barley -
Wheat TraesCS5A02G027400 , TraesCS5D02G035200
Populus -


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cDNA sequences
Sobic.008G175800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G232700 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
2 Sobic.001G394400 controls maturity(PubMedID : 20585750)@"Regulation of the flowering time, PHYB"(PubMedID : 25961888)@far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome B, putative, expressed K12121: phytochrome B
3 Sobic.003G298100 one zinc finger protein, putative, expressed -
4 Sobic.006G273200 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@protein kinase family protein, putative, expressed K14500: BR-signaling kinase
5 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
6 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
7 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
8 Sobic.001G504000 Citrate transporter protein, putative, expressed -
9 Sobic.002G248400 ENT domain containing protein, expressed -
10 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
11 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
12 Sobic.010G280100 expressed protein -
13 Sobic.002G320500 MYB family transcription factor, putative, expressed -
14 Sobic.001G368400 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
15 Sobic.004G246700 zinc finger family protein, putative, expressed -
16 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
17 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
18 Sobic.006G133800 myb-like DNA-binding domain containing protein, expressed -
19 Sobic.008G136200 spotted leaf 11, putative, expressed -
20 Sobic.004G211400 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7


Gene co-expression network
sample Sobic008G175800 Sobic008G175800 Sobic009G232700 Sobic009G232700 Sobic008G175800--Sobic009G232700 Sobic001G394400 Sobic001G394400 Sobic008G175800--Sobic001G394400 Sobic003G298100 Sobic003G298100 Sobic008G175800--Sobic003G298100 Sobic006G273200 Sobic006G273200 Sobic008G175800--Sobic006G273200 Sobic002G157000 Sobic002G157000 Sobic008G175800--Sobic002G157000 Sobic009G087800 Sobic009G087800 Sobic008G175800--Sobic009G087800 Sobic007G205800 Sobic007G205800 Sobic008G175800--Sobic007G205800 Sobic001G504000 Sobic001G504000 Sobic008G175800--Sobic001G504000 Sobic002G248400 Sobic002G248400 Sobic008G175800--Sobic002G248400 Sobic001G107500 Sobic001G107500 Sobic009G232700--Sobic001G107500 Sobic009G232700--Sobic003G298100 Sobic009G022200 Sobic009G022200 Sobic009G232700--Sobic009G022200 Sobic009G232700--Sobic008G175800 Sobic009G232700--Sobic007G205800 Sobic001G368400 Sobic001G368400 Sobic009G232700--Sobic001G368400 Sobic001G131800 Sobic001G131800 Sobic009G232700--Sobic001G131800 Sobic003G324000 Sobic003G324000 Sobic009G232700--Sobic003G324000 Sobic010G056200 Sobic010G056200 Sobic009G232700--Sobic010G056200 Sobic008G116500 Sobic008G116500 Sobic001G394400--Sobic008G116500 Sobic006G246900 Sobic006G246900 Sobic001G394400--Sobic006G246900 Sobic009G104300 Sobic009G104300 Sobic001G394400--Sobic009G104300 Sobic007G037900 Sobic007G037900 Sobic001G394400--Sobic007G037900 Sobic001G543900 Sobic001G543900 Sobic001G394400--Sobic001G543900 Sobic001G394400--Sobic009G087800 Sobic002G049000 Sobic002G049000 Sobic001G394400--Sobic002G049000 Sobic009G178800 Sobic009G178800 Sobic001G394400--Sobic009G178800 Sobic001G162300 Sobic001G162300 Sobic001G394400--Sobic001G162300 Sobic003G298100--Sobic002G248400 Sobic003G298100--Sobic002G157000 Sobic004G205600 Sobic004G205600 Sobic003G298100--Sobic004G205600 Sobic003G298100--Sobic001G107500 Sobic002G320500 Sobic002G320500 Sobic003G298100--Sobic002G320500 Sobic003G108700 Sobic003G108700 Sobic003G298100--Sobic003G108700 Sobic007G104800 Sobic007G104800 Sobic003G298100--Sobic007G104800 Sobic001G497300 Sobic001G497300 Sobic003G298100--Sobic001G497300 Sobic002G399100 Sobic002G399100 Sobic003G298100--Sobic002G399100 Sobic006G273200--Sobic001G497300 Sobic009G065100 Sobic009G065100 Sobic006G273200--Sobic009G065100 Sobic006G273200--Sobic004G205600 Sobic007G096000 Sobic007G096000 Sobic006G273200--Sobic007G096000 Sobic009G233300 Sobic009G233300 Sobic006G273200--Sobic009G233300 Sobic008G062000 Sobic008G062000 Sobic006G273200--Sobic008G062000 Sobic006G237400 Sobic006G237400 Sobic006G273200--Sobic006G237400 Sobic006G273200--Sobic007G205800 Sobic003G176600 Sobic003G176600 Sobic006G273200--Sobic003G176600 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G157000--Sobic003G200200 Sobic001G420200 Sobic001G420200 Sobic002G157000--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic002G157000--Sobic008G173900 Sobic003G268300 Sobic003G268300 Sobic002G157000--Sobic003G268300 Sobic002G157000--Sobic001G162300 Sobic002G157000--Sobic003G108700 Sobic001G094000 Sobic001G094000 Sobic002G157000--Sobic001G094000 Sobic009G087800--Sobic007G205800 Sobic003G258400 Sobic003G258400 Sobic009G087800--Sobic003G258400 Sobic007G011400 Sobic007G011400 Sobic009G087800--Sobic007G011400 Sobic003G093600 Sobic003G093600 Sobic009G087800--Sobic003G093600 Sobic004G271900 Sobic004G271900 Sobic009G087800--Sobic004G271900 Sobic010G263800 Sobic010G263800 Sobic009G087800--Sobic010G263800 Sobic010G026400 Sobic010G026400 Sobic009G087800--Sobic010G026400 Sobic001G424700 Sobic001G424700 Sobic009G087800--Sobic001G424700 Sobic009G198900 Sobic009G198900 Sobic009G087800--Sobic009G198900 Sobic007G205800--Sobic007G011400 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200 Sobic009G161600 Sobic009G161600 Sobic001G504000--Sobic009G161600 Sobic009G127900 Sobic009G127900 Sobic001G504000--Sobic009G127900 Sobic009G140500 Sobic009G140500 Sobic001G504000--Sobic009G140500 Sobic004G290800 Sobic004G290800 Sobic001G504000--Sobic004G290800 Sobic001G504000--Sobic001G420200 Sobic001G504000--Sobic007G037900 Sobic001G274200 Sobic001G274200 Sobic001G504000--Sobic001G274200 Sobic004G205800 Sobic004G205800 Sobic001G504000--Sobic004G205800 Sobic006G082600 Sobic006G082600 Sobic001G504000--Sobic006G082600 Sobic002G248400--Sobic002G157000 Sobic002G248400--Sobic003G108700 Sobic002G248400--Sobic003G268300 Sobic002G248400--Sobic001G420200 Sobic002G248400--Sobic002G320500 Sobic002G248400--Sobic003G200200 Sobic006G032400 Sobic006G032400 Sobic002G248400--Sobic006G032400 Sobic001G090400 Sobic001G090400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400
Octagon: transcription factors


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