Gene annotation
Transcriptome id Sobic.001G394400.1
Synonym PHYB, Ma3;maturity gene, OOP1, PHYB, HY3, Sb01g037340, Ma3;phytochrome
Functional annotation controls maturity (PubMedID : 20585750)
"Regulation of the flowering time, PHYB" (PubMedID : 25961888)
far-red light perception and signal transduction (PubMedID : 14963106)
phytochrome B, putative, expressed
UniProt A0A0H5BHZ4 , A0A0H5AX89 , A0A0H5B2T9 , A0A0H5AX59 , A0A0H5B0J1 , A0A0H5B2G6 , A0A0H5AX29 , A0A0H5AXH0 , A0A0H5AXC9 , A0A0H5BHZ7 , A0A0H5B064 , A0A0H5AX56 , A0A0H5B0S1 , A0A0H5B0F0 , A0A0H5B2E7 , A0A0H5B0U2 , A0A0H5B2W7 , A0A0H5AXK7 , A0A0H5BHM2 , A0A0H5AXE9 , A0A0H5BHI5 , A0A0H5B0U7 , A0A0H5B0G6 , Q6S525 , A0A0H5AXA3 , A0A0H5BHX1 , A0A0H5B071 , A0A0H5AXB8 , A0A0H5AXF4 , A0A0H5BI28 , A0A0H5AX50 , A0A0H5AXF8 , A0A0H5AXN8 , A0A0H5AXM4 , A0A0H5AXI5 , A0A0H5AX75 , A0A0H5AXE6 , A0A0H5AXQ1 , A0A0H5AXG3 , A0A0H5AXL0 , A0A0H5B2G1 , A0A0H5B0M4 , A0A0H5AX42 , Q6S527 , A0A0H5BHK5 , A0A0H5B2Z2 , A0A0H5AXF5 , A0A0H5AXH7 , A0A0H5BI03 , Q6S522 , A0A0H5B076 , A0A0H5AXF0 , P93527
Pfam PF02518 PF00512 PF01590 PF08446 PF00989 PF00360
Panther DB PTHR24423 PTHR24423:SF563
NCBI CDD -
KEGG Orthology K12121; phytochrome B
Gene Ontology GO:0007165; signal transduction GO:0000155phosphorelay sensor kinase activity GO:0005515protein binding GO:0006355regulation of transcription, DNA-templated GO:0018298protein-chromophore linkage GO:0009584detection of visible light


Orthologs (automatic annotation)
TAIR AT2G18790 : phytochrome B
RAP-DB (Rice) LOC_Os03g19590.1 : phytochrome B, putative, expressed
MaizeGDB (Corn) Zm00025a002170 , Zm00025a052548
Brachypodium KQK21983 , KQK21982 , KQK21984
Barley HORVU4Hr1G053400.1
Wheat TraesCS4B02G182400 , TraesCS4A02G122500 , TraesCS4D02G183400 , TraesCS4D02G183400 , TraesCS4A02G122500 , TraesCS4A02G122500
Populus PNT16535 , PNT16534 , PNT16536


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G116500 plus-3 domain containing protein, expressed K15178: RNA polymerase-associated protein RTF1
2 Sobic.006G246900 expressed protein -
3 Sobic.009G104300 - -
4 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
5 Sobic.001G543900 H(+)-ATPase 7(PubMedID : 26320239)@E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
6 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
7 Sobic.002G049000 frigida, putative, expressed -
8 Sobic.009G178800 bZIP transcription factor, putative, expressed K14432: ABA responsive element binding factor
9 Sobic.001G162300 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
10 Sobic.002G144933 - -
11 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
12 Sobic.001G477800 expressed protein -
13 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
14 Sobic.008G175800 methyl-CpG binding domain containing protein, putative, expressed -
15 Sobic.009G072333 - -
16 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
17 Sobic.001G094000 expressed protein -
18 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
19 Sobic.002G186000 CD2-binding protein-related, putative, expressed K13099: CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2
20 Sobic.007G112900 - -


Gene co-expression network
sample Sobic001G394400 Sobic001G394400 Sobic008G116500 Sobic008G116500 Sobic001G394400--Sobic008G116500 Sobic006G246900 Sobic006G246900 Sobic001G394400--Sobic006G246900 Sobic009G104300 Sobic009G104300 Sobic001G394400--Sobic009G104300 Sobic007G037900 Sobic007G037900 Sobic001G394400--Sobic007G037900 Sobic001G543900 Sobic001G543900 Sobic001G394400--Sobic001G543900 Sobic009G087800 Sobic009G087800 Sobic001G394400--Sobic009G087800 Sobic002G049000 Sobic002G049000 Sobic001G394400--Sobic002G049000 Sobic009G178800 Sobic009G178800 Sobic001G394400--Sobic009G178800 Sobic001G162300 Sobic001G162300 Sobic001G394400--Sobic001G162300 Sobic002G001600 Sobic002G001600 Sobic008G116500--Sobic002G001600 Sobic008G116500--Sobic001G543900 Sobic007G011400 Sobic007G011400 Sobic008G116500--Sobic007G011400 Sobic001G439500 Sobic001G439500 Sobic008G116500--Sobic001G439500 Sobic006G080300 Sobic006G080300 Sobic008G116500--Sobic006G080300 Sobic007G037100 Sobic007G037100 Sobic008G116500--Sobic007G037100 Sobic002G313300 Sobic002G313300 Sobic008G116500--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic008G116500--Sobic001G477800 Sobic004G196700 Sobic004G196700 Sobic008G116500--Sobic004G196700 Sobic006G246900--Sobic001G162300 Sobic003G268300 Sobic003G268300 Sobic006G246900--Sobic003G268300 Sobic006G246900--Sobic007G037900 Sobic001G094000 Sobic001G094000 Sobic006G246900--Sobic001G094000 Sobic002G157000 Sobic002G157000 Sobic006G246900--Sobic002G157000 Sobic009G134500 Sobic009G134500 Sobic006G246900--Sobic009G134500 Sobic008G063000 Sobic008G063000 Sobic006G246900--Sobic008G063000 Sobic006G246900--Sobic001G477800 Sobic006G246900--Sobic007G011400 Sobic007G116400 Sobic007G116400 Sobic009G104300--Sobic007G116400 Sobic009G104300--Sobic006G080300 Sobic003G170100 Sobic003G170100 Sobic009G104300--Sobic003G170100 Sobic009G104300--Sobic001G094000 Sobic009G104300--Sobic001G543900 Sobic001G454301 Sobic001G454301 Sobic009G104300--Sobic001G454301 Sobic007G137900 Sobic007G137900 Sobic009G104300--Sobic007G137900 Sobic001G272000 Sobic001G272000 Sobic009G104300--Sobic001G272000 Sobic009G104300--Sobic001G477800 Sobic007G037900--Sobic003G268300 Sobic001G420200 Sobic001G420200 Sobic007G037900--Sobic001G420200 Sobic007G037900--Sobic006G246900 Sobic002G144933 Sobic002G144933 Sobic007G037900--Sobic002G144933 Sobic001G274200 Sobic001G274200 Sobic007G037900--Sobic001G274200 Sobic009G127900 Sobic009G127900 Sobic007G037900--Sobic009G127900 Sobic007G037900--Sobic001G162300 Sobic004G290800 Sobic004G290800 Sobic007G037900--Sobic004G290800 Sobic007G037900--Sobic002G157000 Sobic001G543900--Sobic001G477800 Sobic001G543900--Sobic002G313300 Sobic004G112500 Sobic004G112500 Sobic001G543900--Sobic004G112500 Sobic001G543900--Sobic002G001600 Sobic006G009400 Sobic006G009400 Sobic001G543900--Sobic006G009400 Sobic002G166700 Sobic002G166700 Sobic001G543900--Sobic002G166700 Sobic005G130200 Sobic005G130200 Sobic001G543900--Sobic005G130200 Sobic001G543900--Sobic001G272000 Sobic010G248200 Sobic010G248200 Sobic001G543900--Sobic010G248200 Sobic007G205800 Sobic007G205800 Sobic009G087800--Sobic007G205800 Sobic003G258400 Sobic003G258400 Sobic009G087800--Sobic003G258400 Sobic009G087800--Sobic007G011400 Sobic003G093600 Sobic003G093600 Sobic009G087800--Sobic003G093600 Sobic004G271900 Sobic004G271900 Sobic009G087800--Sobic004G271900 Sobic010G263800 Sobic010G263800 Sobic009G087800--Sobic010G263800 Sobic010G026400 Sobic010G026400 Sobic009G087800--Sobic010G026400 Sobic001G424700 Sobic001G424700 Sobic009G087800--Sobic001G424700 Sobic009G198900 Sobic009G198900 Sobic009G087800--Sobic009G198900 Sobic003G346000 Sobic003G346000 Sobic002G049000--Sobic003G346000 Sobic002G297800 Sobic002G297800 Sobic002G049000--Sobic002G297800 Sobic002G090400 Sobic002G090400 Sobic002G049000--Sobic002G090400 Sobic008G068800 Sobic008G068800 Sobic002G049000--Sobic008G068800 Sobic002G049000--Sobic007G011400 Sobic002G061400 Sobic002G061400 Sobic002G049000--Sobic002G061400 Sobic002G049000--Sobic001G094000 Sobic008G034600 Sobic008G034600 Sobic002G049000--Sobic008G034600 Sobic002G049000--Sobic001G394400 Sobic002G248400 Sobic002G248400 Sobic009G178800--Sobic002G248400 Sobic008G054500 Sobic008G054500 Sobic009G178800--Sobic008G054500 Sobic009G178800--Sobic002G157000 Sobic006G183800 Sobic006G183800 Sobic009G178800--Sobic006G183800 Sobic006G032400 Sobic006G032400 Sobic009G178800--Sobic006G032400 Sobic002G320500 Sobic002G320500 Sobic009G178800--Sobic002G320500 Sobic009G178800--Sobic001G420200 Sobic009G178800--Sobic002G144933 Sobic003G084900 Sobic003G084900 Sobic009G178800--Sobic003G084900 Sobic001G162300--Sobic002G157000 Sobic001G162300--Sobic006G246900 Sobic001G162300--Sobic003G268300 Sobic007G178700 Sobic007G178700 Sobic001G162300--Sobic007G178700 Sobic006G082600 Sobic006G082600 Sobic001G162300--Sobic006G082600 Sobic001G162300--Sobic007G011400 Sobic001G162300--Sobic001G094000 Sobic001G162300--Sobic003G170100 Sobic001G162300--Sobic001G477800
Octagon: transcription factors


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