Gene annotation
Transcriptome id Sobic.001G504000.11,Sobic.001G504000.6,Sobic.001G504000.2,Sobic.001G504000.10,Sobic.001G504000.3,Sobic.001G504000.14,Sobic.001G504000.12,Sobic.001G504000.9,Sobic.001G504000.13
Synonym Sb01g047080
Functional annotation Citrate transporter protein, putative, expressed
UniProt A0A1B6QQI4 , A0A1B6QQI2
Pfam PF00939 PF02040
Panther DB PTHR10283 PTHR10283:SF97
NCBI CDD KOG2639; Sodium sulfate symporter and related arsenite permeases
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0015700arsenite transport GO:0015105arsenite transmembrane transporter activity GO:0016020membrane GO:0006814sodium ion transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT1G02260 : Divalent ion symporter
RAP-DB (Rice) LOC_Os03g05390.2,LOC_Os03g05390.4,LOC_Os03g05390.6,LOC_Os03g05390.3,LOC_Os03g05390.1,LOC_Os03g05390.5 : Citrate transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a017700 , Zm00025a053208 , Zm00025a000650 , Zm00025a017367 , Zm00025a006747
Brachypodium KQJ96919 , KQJ96920 , KQJ96921 , PNT67476
Barley HORVU4Hr1G079710.8 , HORVU4Hr1G079710.9 , HORVU4Hr1G079710.2 , HORVU4Hr1G079710.3 , HORVU4Hr1G079710.1 , HORVU4Hr1G079710.6 , HORVU4Hr1G079710.7 , HORVU4Hr1G079710.4 , HORVU4Hr1G079710.5 , HORVU1Hr1G037760.8 , HORVU1Hr1G037760.9 , HORVU1Hr1G037760.1 , HORVU1Hr1G037760.2 , HORVU1Hr1G037760.4 , HORVU1Hr1G037760.5 , HORVU1Hr1G037760.6 , HORVU1Hr1G037760.7 , HORVU1Hr1G037760.12 , HORVU1Hr1G037760.10 , HORVU1Hr1G037760.11 , HORVU1Hr1G037760.3 , HORVU4Hr1G079710.10
Wheat TraesCS1A02G142400 , TraesCS1D02G141400 , TraesCS1B02G159400
Populus -


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cDNA sequences
Sobic.001G504000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G161600 - -
2 Sobic.009G127900 - -
3 Sobic.009G140500 no apical meristem protein, putative, expressed -
4 Sobic.004G290800 GRAS family transcription factor(PubMedID : 23915383)@scarecrow, putative, expressed -
5 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
6 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
7 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
8 Sobic.004G205800 cyclin-dependent kinase G-1, putative, expressed K08818: cell division cycle 2-like
9 Sobic.006G082600 OsFBX133 - F-box domain containing protein, expressed K10295: F-box protein 9
10 Sobic.001G368400 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
11 Sobic.001G133466 - -
12 Sobic.007G178700 - -
13 Sobic.001G446900 arginyl-tRNA synthetase, putative, expressed -
14 Sobic.003G268300 surp module family protein, putative, expressed -
15 Sobic.005G144400 - -
16 Sobic.007G145200 serine esterase family protein, putative, expressed -
17 Sobic.001G067850 - -
18 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
19 Sobic.008G175800 methyl-CpG binding domain containing protein, putative, expressed -
20 Sobic.001G306000 protein kinase, putative, expressed -


Gene co-expression network
sample Sobic001G504000 Sobic001G504000 Sobic009G161600 Sobic009G161600 Sobic001G504000--Sobic009G161600 Sobic009G127900 Sobic009G127900 Sobic001G504000--Sobic009G127900 Sobic009G140500 Sobic009G140500 Sobic001G504000--Sobic009G140500 Sobic004G290800 Sobic004G290800 Sobic001G504000--Sobic004G290800 Sobic001G420200 Sobic001G420200 Sobic001G504000--Sobic001G420200 Sobic007G037900 Sobic007G037900 Sobic001G504000--Sobic007G037900 Sobic001G274200 Sobic001G274200 Sobic001G504000--Sobic001G274200 Sobic004G205800 Sobic004G205800 Sobic001G504000--Sobic004G205800 Sobic006G082600 Sobic006G082600 Sobic001G504000--Sobic006G082600 Sobic001G133466 Sobic001G133466 Sobic009G161600--Sobic001G133466 Sobic001G111900 Sobic001G111900 Sobic009G161600--Sobic001G111900 Sobic009G161600--Sobic001G420200 Sobic009G161600--Sobic001G504000 Sobic007G178700 Sobic007G178700 Sobic009G161600--Sobic007G178700 Sobic005G159000 Sobic005G159000 Sobic009G161600--Sobic005G159000 Sobic009G161600--Sobic001G274200 Sobic009G161600--Sobic009G127900 Sobic001G287201 Sobic001G287201 Sobic009G161600--Sobic001G287201 Sobic009G127900--Sobic007G178700 Sobic003G268300 Sobic003G268300 Sobic009G127900--Sobic003G268300 Sobic001G446900 Sobic001G446900 Sobic009G127900--Sobic001G446900 Sobic006G066650 Sobic006G066650 Sobic009G127900--Sobic006G066650 Sobic009G127900--Sobic004G290800 Sobic010G026400 Sobic010G026400 Sobic009G127900--Sobic010G026400 Sobic009G127900--Sobic007G037900 Sobic008G173900 Sobic008G173900 Sobic009G127900--Sobic008G173900 Sobic009G127900--Sobic001G111900 Sobic009G140500--Sobic001G274200 Sobic001G067850 Sobic001G067850 Sobic009G140500--Sobic001G067850 Sobic010G123901 Sobic010G123901 Sobic009G140500--Sobic010G123901 Sobic009G140500--Sobic007G037900 Sobic009G140500--Sobic004G290800 Sobic009G140500--Sobic001G420200 Sobic003G179201 Sobic003G179201 Sobic009G140500--Sobic003G179201 Sobic002G203200 Sobic002G203200 Sobic009G140500--Sobic002G203200 Sobic007G096600 Sobic007G096600 Sobic009G140500--Sobic007G096600 Sobic004G290800--Sobic009G127900 Sobic004G290800--Sobic001G420200 Sobic004G290800--Sobic007G178700 Sobic004G290800--Sobic007G037900 Sobic004G290800--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic004G290800--Sobic001G162300 Sobic002G157000 Sobic002G157000 Sobic004G290800--Sobic002G157000 Sobic004G290800--Sobic001G111900 Sobic004G290800--Sobic001G446900 Sobic001G420200--Sobic001G274200 Sobic001G420200--Sobic002G157000 Sobic001G420200--Sobic003G268300 Sobic001G420200--Sobic008G173900 Sobic002G248400 Sobic002G248400 Sobic001G420200--Sobic002G248400 Sobic001G420200--Sobic007G096600 Sobic001G420200--Sobic007G037900 Sobic002G144933 Sobic002G144933 Sobic001G420200--Sobic002G144933 Sobic001G420200--Sobic007G178700 Sobic007G037900--Sobic003G268300 Sobic007G037900--Sobic001G420200 Sobic006G246900 Sobic006G246900 Sobic007G037900--Sobic006G246900 Sobic007G037900--Sobic002G144933 Sobic007G037900--Sobic001G274200 Sobic007G037900--Sobic009G127900 Sobic007G037900--Sobic001G162300 Sobic007G037900--Sobic004G290800 Sobic007G037900--Sobic002G157000 Sobic001G274200--Sobic001G420200 Sobic001G274200--Sobic007G096600 Sobic001G274200--Sobic003G268300 Sobic001G274200--Sobic008G173900 Sobic001G274200--Sobic002G144933 Sobic001G274200--Sobic001G133466 Sobic001G274200--Sobic007G037900 Sobic002G243900 Sobic002G243900 Sobic001G274200--Sobic002G243900 Sobic001G274200--Sobic010G123901 Sobic001G214300 Sobic001G214300 Sobic004G205800--Sobic001G214300 Sobic003G029700 Sobic003G029700 Sobic004G205800--Sobic003G029700 Sobic009G026500 Sobic009G026500 Sobic004G205800--Sobic009G026500 Sobic001G191600 Sobic001G191600 Sobic004G205800--Sobic001G191600 Sobic008G192600 Sobic008G192600 Sobic004G205800--Sobic008G192600 Sobic005G144400 Sobic005G144400 Sobic004G205800--Sobic005G144400 Sobic001G365900 Sobic001G365900 Sobic004G205800--Sobic001G365900 Sobic003G148000 Sobic003G148000 Sobic004G205800--Sobic003G148000 Sobic001G318432 Sobic001G318432 Sobic004G205800--Sobic001G318432 Sobic006G082600--Sobic001G162300 Sobic006G082600--Sobic007G178700 Sobic007G037100 Sobic007G037100 Sobic006G082600--Sobic007G037100 Sobic001G251700 Sobic001G251700 Sobic006G082600--Sobic001G251700 Sobic004G196700 Sobic004G196700 Sobic006G082600--Sobic004G196700 Sobic009G134500 Sobic009G134500 Sobic006G082600--Sobic009G134500 Sobic010G124001 Sobic010G124001 Sobic006G082600--Sobic010G124001 Sobic006G082600--Sobic009G127900 Sobic006G082600--Sobic002G157000
Octagon: transcription factors


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