Gene annotation
Transcriptome id Sobic.009G190800.2
Synonym ATTRX3, TRX3, ATH3, ATTRXH3, Sb09g024960, TRXH3
Functional annotation thioredoxin, putative, expressed
UniProt A0A1Z5R412
Pfam PF14595
Panther DB PTHR10438 PTHR10438:SF265
NCBI CDD KOG0907; Thioredoxin
KEGG Orthology K03671; thioredoxin 1
Gene Ontology GO:0015035; protein disulfide oxidoreductase activity GO:0006662glycerol ether metabolic process


Orthologs (automatic annotation)
TAIR AT5G42980 : thioredoxin 3
RAP-DB (Rice) LOC_Os07g08840.1 : thioredoxin, putative, expressed
MaizeGDB (Corn) Zm00025a044171
Brachypodium KQK05509
Barley HORVU1Hr1G075560.1
Wheat TraesCS1A02G325600 , TraesCS1B02G338800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G190800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G341800 von Willebrand factor type A domain containing protein, expressed -
2 Sobic.001G022600 glycine-rich RNA-binding protein 7, putative, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
3 Sobic.003G359900 C2 domain containing protein, expressed -
4 Sobic.003G103200 pex14, putative, expressed K13343: peroxin-14
5 Sobic.004G214100 "BC14(Ortholog in rice:Zhang et al., 2011)"(PubMedID : 31659885)@transporter family protein, putative, expressed K15281: solute carrier family 35
6 Sobic.002G281800 expressed protein -
7 Sobic.005G072200 lipase, putative, expressed -
8 Sobic.001G416300 expressed protein -
9 Sobic.007G168200 peptidyl-prolyl cis-trans isomerase, putative, expressed K12733: peptidyl-prolyl cis-trans isomerase-like 1
10 Sobic.008G142600 amino acid permease family protein, putative, expressed -
11 Sobic.007G062500 expressed protein -
12 Sobic.009G141400 transcriptional regulator, putative, expressed -
13 Sobic.005G064800 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
14 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
15 Sobic.002G193400 lipase, putative, expressed K18875: enhanced disease susceptibility 1 protein
16 Sobic.002G404200 F-box domain containing protein, expressed -
17 Sobic.010G080300 peptidase, putative, expressed K01436: amidohydrolase
18 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
19 Sobic.001G427500 B4-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
20 Sobic.001G261597 - K07904: Ras-related protein Rab-11A


Gene co-expression network
sample Sobic009G190800 Sobic009G190800 Sobic001G341800 Sobic001G341800 Sobic009G190800--Sobic001G341800 Sobic001G022600 Sobic001G022600 Sobic009G190800--Sobic001G022600 Sobic003G359900 Sobic003G359900 Sobic009G190800--Sobic003G359900 Sobic003G103200 Sobic003G103200 Sobic009G190800--Sobic003G103200 Sobic004G214100 Sobic004G214100 Sobic009G190800--Sobic004G214100 Sobic002G281800 Sobic002G281800 Sobic009G190800--Sobic002G281800 Sobic005G072200 Sobic005G072200 Sobic009G190800--Sobic005G072200 Sobic001G416300 Sobic001G416300 Sobic009G190800--Sobic001G416300 Sobic007G168200 Sobic007G168200 Sobic009G190800--Sobic007G168200 Sobic001G341800--Sobic009G190800 Sobic002G404200 Sobic002G404200 Sobic001G341800--Sobic002G404200 Sobic007G029100 Sobic007G029100 Sobic001G341800--Sobic007G029100 Sobic001G202500 Sobic001G202500 Sobic001G341800--Sobic001G202500 Sobic009G036300 Sobic009G036300 Sobic001G341800--Sobic009G036300 Sobic001G324400 Sobic001G324400 Sobic001G341800--Sobic001G324400 Sobic001G341800--Sobic002G281800 Sobic001G341800--Sobic007G168200 Sobic001G367500 Sobic001G367500 Sobic001G341800--Sobic001G367500 Sobic001G022600--Sobic009G190800 Sobic001G022600--Sobic004G214100 Sobic002G193400 Sobic002G193400 Sobic001G022600--Sobic002G193400 Sobic008G142600 Sobic008G142600 Sobic001G022600--Sobic008G142600 Sobic002G117200 Sobic002G117200 Sobic001G022600--Sobic002G117200 Sobic001G427500 Sobic001G427500 Sobic001G022600--Sobic001G427500 Sobic004G174100 Sobic004G174100 Sobic001G022600--Sobic004G174100 Sobic001G427700 Sobic001G427700 Sobic001G022600--Sobic001G427700 Sobic001G022600--Sobic003G359900 Sobic003G359900--Sobic005G072200 Sobic003G359900--Sobic009G190800 Sobic004G227300 Sobic004G227300 Sobic003G359900--Sobic004G227300 Sobic001G261597 Sobic001G261597 Sobic003G359900--Sobic001G261597 Sobic009G205600 Sobic009G205600 Sobic003G359900--Sobic009G205600 Sobic003G359900--Sobic004G214100 Sobic003G261900 Sobic003G261900 Sobic003G359900--Sobic003G261900 Sobic006G065900 Sobic006G065900 Sobic003G359900--Sobic006G065900 Sobic002G271600 Sobic002G271600 Sobic003G359900--Sobic002G271600 Sobic003G103200--Sobic009G190800 Sobic002G137300 Sobic002G137300 Sobic003G103200--Sobic002G137300 Sobic006G024500 Sobic006G024500 Sobic003G103200--Sobic006G024500 Sobic008G081300 Sobic008G081300 Sobic003G103200--Sobic008G081300 Sobic005G044400 Sobic005G044400 Sobic003G103200--Sobic005G044400 Sobic008G193300 Sobic008G193300 Sobic003G103200--Sobic008G193300 Sobic009G141400 Sobic009G141400 Sobic003G103200--Sobic009G141400 Sobic002G181300 Sobic002G181300 Sobic003G103200--Sobic002G181300 Sobic008G144800 Sobic008G144800 Sobic003G103200--Sobic008G144800 Sobic004G214100--Sobic001G022600 Sobic004G214100--Sobic004G227300 Sobic004G214100--Sobic009G190800 Sobic004G214100--Sobic001G261597 Sobic004G214100--Sobic003G359900 Sobic006G269000 Sobic006G269000 Sobic004G214100--Sobic006G269000 Sobic004G214100--Sobic007G168200 Sobic004G214100--Sobic001G427500 Sobic010G009400 Sobic010G009400 Sobic004G214100--Sobic010G009400 Sobic010G080300 Sobic010G080300 Sobic002G281800--Sobic010G080300 Sobic003G291400 Sobic003G291400 Sobic002G281800--Sobic003G291400 Sobic008G072700 Sobic008G072700 Sobic002G281800--Sobic008G072700 Sobic007G046500 Sobic007G046500 Sobic002G281800--Sobic007G046500 Sobic002G281800--Sobic007G029100 Sobic002G281800--Sobic009G190800 Sobic003G310100 Sobic003G310100 Sobic002G281800--Sobic003G310100 Sobic004G152100 Sobic004G152100 Sobic002G281800--Sobic004G152100 Sobic009G029700 Sobic009G029700 Sobic002G281800--Sobic009G029700 Sobic005G072200--Sobic003G359900 Sobic006G052200 Sobic006G052200 Sobic005G072200--Sobic006G052200 Sobic002G073900 Sobic002G073900 Sobic005G072200--Sobic002G073900 Sobic005G072200--Sobic010G080300 Sobic005G072200--Sobic009G190800 Sobic001G351100 Sobic001G351100 Sobic005G072200--Sobic001G351100 Sobic003G402200 Sobic003G402200 Sobic005G072200--Sobic003G402200 Sobic004G096100 Sobic004G096100 Sobic005G072200--Sobic004G096100 Sobic001G314900 Sobic001G314900 Sobic005G072200--Sobic001G314900 Sobic006G170200 Sobic006G170200 Sobic001G416300--Sobic006G170200 Sobic001G161300 Sobic001G161300 Sobic001G416300--Sobic001G161300 Sobic002G226100 Sobic002G226100 Sobic001G416300--Sobic002G226100 Sobic001G416300--Sobic001G427700 Sobic004G018400 Sobic004G018400 Sobic001G416300--Sobic004G018400 Sobic001G416300--Sobic009G190800 Sobic001G416300--Sobic003G402200 Sobic005G089000 Sobic005G089000 Sobic001G416300--Sobic005G089000 Sobic001G416300--Sobic008G142600 Sobic001G380500 Sobic001G380500 Sobic007G168200--Sobic001G380500 Sobic007G168200--Sobic009G190800 Sobic001G039800 Sobic001G039800 Sobic007G168200--Sobic001G039800 Sobic001G294200 Sobic001G294200 Sobic007G168200--Sobic001G294200 Sobic007G168200--Sobic006G269000 Sobic009G065200 Sobic009G065200 Sobic007G168200--Sobic009G065200 Sobic007G168200--Sobic001G341800 Sobic007G168200--Sobic004G214100 Sobic007G168200--Sobic003G103200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.