Gene annotation
Transcriptome id Sobic.001G261597.1
Synonym -
Functional annotation -
UniProt C6JSH5 , C6JRW3
Pfam PF00025
Panther DB PTHR24073:SF350 PTHR24073
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G65270 : RAB GTPase homolog A4A
RAP-DB (Rice) LOC_Os10g23100.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a044235 , Zm00025a001034 , Zm00025a038760 , Zm00025a028122 , Zm00025a044575 , Zm00025a017900 , Zm00025a053218
Brachypodium KQJ96486 , KQK09101 , KQJ98137 , KQJ89680 , KQJ99067 , KQJ98073
Barley HORVU7Hr1G052840.4 , HORVU7Hr1G052840.2 , HORVU7Hr1G052840.3 , HORVU7Hr1G052840.1 , HORVU1Hr1G034400.1 , HORVU1Hr1G034400.3 , HORVU1Hr1G034400.4 , HORVU1Hr1G034400.5 , HORVU1Hr1G034400.6 , HORVU1Hr1G034400.7 , HORVU1Hr1G034400.8 , HORVU5Hr1G080990.1 , HORVU5Hr1G080990.3 , HORVU5Hr1G080990.2 , HORVU7Hr1G063910.2 , HORVU3Hr1G061000.1 , HORVU3Hr1G061000.2 , HORVU3Hr1G061000.3 , HORVU3Hr1G061000.4 , HORVU3Hr1G061000.5 , HORVU3Hr1G061000.6 , HORVU3Hr1G061000.7 , HORVU3Hr1G061000.8
Wheat TraesCS1B02G152100 , TraesCS1D02G136900 , TraesCS3B02G272300 , TraesCS5B02G171900 , TraesCS3B02G277200 , TraesCS7B02G200600 , TraesCS7D02G254400 , TraesCS7A02G285200 , TraesCS4D02G308700 , TraesCS5D02G179100 , TraesCS4B02G310800 , TraesCS7B02G152600 , TraesCS7D02G289000 , TraesCS5A02G176000 , TraesCS4A02G410700 , TraesCS3A02G247000 , TraesCS5A02G315700 , TraesCS1A02G131500 , TraesCS1A02G131500 , TraesCS3D02G244500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
2 Sobic.003G000150 - -
3 Sobic.004G214100 "BC14(Ortholog in rice:Zhang et al., 2011)"(PubMedID : 31659885)@transporter family protein, putative, expressed K15281: solute carrier family 35
4 Sobic.002G073900 expressed protein -
5 Sobic.003G359900 C2 domain containing protein, expressed -
6 Sobic.001G427500 B4-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
7 Sobic.005G072200 lipase, putative, expressed -
8 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
9 Sobic.009G190800 thioredoxin, putative, expressed K03671: thioredoxin 1
10 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.007G062500 expressed protein -
12 Sobic.009G008100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
13 Sobic.009G094800 sugar porter, putative, expressed -
14 Sobic.001G429300 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13414: mitogen-activated protein kinase kinase kinase 1
15 Sobic.008G080200 leucine-rich repeat family protein, putative, expressed -
16 Sobic.003G308700 BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
17 Sobic.003G368800 expressed protein -
18 Sobic.001G387600 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
19 Sobic.009G205600 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
20 Sobic.002G174900 cysteine desulfurase 1, mitochondrial precursor, putative, expressed K04487: iscS, cysteine desulfurase


Gene co-expression network
sample Sobic001G261597 Sobic001G261597 Sobic004G227300 Sobic004G227300 Sobic001G261597--Sobic004G227300 Sobic003G000150 Sobic003G000150 Sobic001G261597--Sobic003G000150 Sobic004G214100 Sobic004G214100 Sobic001G261597--Sobic004G214100 Sobic002G073900 Sobic002G073900 Sobic001G261597--Sobic002G073900 Sobic003G359900 Sobic003G359900 Sobic001G261597--Sobic003G359900 Sobic001G427500 Sobic001G427500 Sobic001G261597--Sobic001G427500 Sobic005G072200 Sobic005G072200 Sobic001G261597--Sobic005G072200 Sobic002G040800 Sobic002G040800 Sobic001G261597--Sobic002G040800 Sobic009G190800 Sobic009G190800 Sobic001G261597--Sobic009G190800 Sobic004G227300--Sobic001G427500 Sobic004G227300--Sobic001G261597 Sobic006G171700 Sobic006G171700 Sobic004G227300--Sobic006G171700 Sobic004G227300--Sobic003G359900 Sobic003G299000 Sobic003G299000 Sobic004G227300--Sobic003G299000 Sobic004G227300--Sobic004G214100 Sobic002G259400 Sobic002G259400 Sobic004G227300--Sobic002G259400 Sobic007G062500 Sobic007G062500 Sobic004G227300--Sobic007G062500 Sobic006G119800 Sobic006G119800 Sobic004G227300--Sobic006G119800 Sobic002G187801 Sobic002G187801 Sobic003G000150--Sobic002G187801 Sobic008G165700 Sobic008G165700 Sobic003G000150--Sobic008G165700 Sobic003G142700 Sobic003G142700 Sobic003G000150--Sobic003G142700 Sobic003G000150--Sobic001G261597 Sobic003G018900 Sobic003G018900 Sobic003G000150--Sobic003G018900 Sobic008G139700 Sobic008G139700 Sobic003G000150--Sobic008G139700 Sobic003G000150--Sobic006G171700 Sobic010G090900 Sobic010G090900 Sobic003G000150--Sobic010G090900 Sobic003G250500 Sobic003G250500 Sobic003G000150--Sobic003G250500 Sobic001G022600 Sobic001G022600 Sobic004G214100--Sobic001G022600 Sobic004G214100--Sobic004G227300 Sobic004G214100--Sobic009G190800 Sobic004G214100--Sobic001G261597 Sobic004G214100--Sobic003G359900 Sobic006G269000 Sobic006G269000 Sobic004G214100--Sobic006G269000 Sobic007G168200 Sobic007G168200 Sobic004G214100--Sobic007G168200 Sobic004G214100--Sobic001G427500 Sobic010G009400 Sobic010G009400 Sobic004G214100--Sobic010G009400 Sobic003G308700 Sobic003G308700 Sobic002G073900--Sobic003G308700 Sobic002G073900--Sobic005G072200 Sobic006G042200 Sobic006G042200 Sobic002G073900--Sobic006G042200 Sobic007G054100 Sobic007G054100 Sobic002G073900--Sobic007G054100 Sobic002G073900--Sobic001G261597 Sobic004G092000 Sobic004G092000 Sobic002G073900--Sobic004G092000 Sobic009G008100 Sobic009G008100 Sobic002G073900--Sobic009G008100 Sobic002G073900--Sobic004G227300 Sobic002G073900--Sobic010G009400 Sobic003G359900--Sobic005G072200 Sobic003G359900--Sobic009G190800 Sobic003G359900--Sobic004G227300 Sobic003G359900--Sobic001G261597 Sobic009G205600 Sobic009G205600 Sobic003G359900--Sobic009G205600 Sobic003G359900--Sobic004G214100 Sobic003G261900 Sobic003G261900 Sobic003G359900--Sobic003G261900 Sobic006G065900 Sobic006G065900 Sobic003G359900--Sobic006G065900 Sobic002G271600 Sobic002G271600 Sobic003G359900--Sobic002G271600 Sobic002G339500 Sobic002G339500 Sobic001G427500--Sobic002G339500 Sobic002G193400 Sobic002G193400 Sobic001G427500--Sobic002G193400 Sobic001G427500--Sobic004G227300 Sobic006G004600 Sobic006G004600 Sobic001G427500--Sobic006G004600 Sobic001G427500--Sobic007G062500 Sobic001G417900 Sobic001G417900 Sobic001G427500--Sobic001G417900 Sobic009G017400 Sobic009G017400 Sobic001G427500--Sobic009G017400 Sobic001G427500--Sobic001G261597 Sobic001G427500--Sobic001G022600 Sobic005G072200--Sobic003G359900 Sobic006G052200 Sobic006G052200 Sobic005G072200--Sobic006G052200 Sobic005G072200--Sobic002G073900 Sobic010G080300 Sobic010G080300 Sobic005G072200--Sobic010G080300 Sobic005G072200--Sobic009G190800 Sobic001G351100 Sobic001G351100 Sobic005G072200--Sobic001G351100 Sobic003G402200 Sobic003G402200 Sobic005G072200--Sobic003G402200 Sobic004G096100 Sobic004G096100 Sobic005G072200--Sobic004G096100 Sobic001G314900 Sobic001G314900 Sobic005G072200--Sobic001G314900 Sobic010G228700 Sobic010G228700 Sobic002G040800--Sobic010G228700 Sobic009G094800 Sobic009G094800 Sobic002G040800--Sobic009G094800 Sobic001G544500 Sobic001G544500 Sobic002G040800--Sobic001G544500 Sobic002G174900 Sobic002G174900 Sobic002G040800--Sobic002G174900 Sobic008G001400 Sobic008G001400 Sobic002G040800--Sobic008G001400 Sobic004G135300 Sobic004G135300 Sobic002G040800--Sobic004G135300 Sobic002G040800--Sobic006G042200 Sobic003G368800 Sobic003G368800 Sobic002G040800--Sobic003G368800 Sobic006G263000 Sobic006G263000 Sobic002G040800--Sobic006G263000 Sobic001G341800 Sobic001G341800 Sobic009G190800--Sobic001G341800 Sobic009G190800--Sobic001G022600 Sobic009G190800--Sobic003G359900 Sobic003G103200 Sobic003G103200 Sobic009G190800--Sobic003G103200 Sobic009G190800--Sobic004G214100 Sobic002G281800 Sobic002G281800 Sobic009G190800--Sobic002G281800 Sobic009G190800--Sobic005G072200 Sobic001G416300 Sobic001G416300 Sobic009G190800--Sobic001G416300 Sobic009G190800--Sobic007G168200
Octagon: transcription factors


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