Gene annotation
Transcriptome id Sobic.009G008100.2,Sobic.009G008100.1,Sobic.009G008100.3
Synonym Sb09g000910
Functional annotation lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
UniProt A0A1B6P5W8 , A0A1B6P5Y8
Pfam PF05212
Panther DB PTHR31210 PTHR31210:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G28310 : Protein of unknown function (DUF707)
RAP-DB (Rice) LOC_Os05g01760.1 : lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
MaizeGDB (Corn) Zm00025a040963
Brachypodium KQK08067 , KQK08066 , KQK11737 , KQK11738
Barley HORVU3Hr1G114290.2 , HORVU3Hr1G114290.1 , HORVU0Hr1G031960.1 , HORVU0Hr1G031960.3 , HORVU0Hr1G031960.2
Wheat TraesCS3D02G530200 , TraesCS3B02G592300 , TraesCS1B02G031600 , TraesCS3A02G525000 , TraesCS1A02G025200 , TraesCS1D02G025400
Populus PNS95555 , PNS95554 , PNT14748 , PNT14744 , PNT14745 , PNT14746 , PNT14747 , PNS95553 , PNS95552 , PNT05502 , PNT14750


JBrowse

Open New Page


cDNA sequences
Sobic.009G008100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G057700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
2 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
3 Sobic.003G308700 BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
4 Sobic.002G073900 expressed protein -
5 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
6 Sobic.001G222250 - -
7 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
8 Sobic.001G261597 - K07904: Ras-related protein Rab-11A
9 Sobic.006G043300 - -
10 Sobic.010G079900 AT hook-containing DNA-binding protein, putative, expressed -
11 Sobic.004G189900 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed K13418: somatic embryogenesis receptor kinase 1
12 Sobic.007G054100 stress-induced protein, putative, expressed -
13 Sobic.003G412700 serine palmitoyltransferase 2, putative, expressed K00654: serine palmitoyltransferase
14 Sobic.002G273700 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
15 Sobic.003G221800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.006G130800 transporter family protein, putative, expressed K08150: SLC2A13, MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13
17 Sobic.008G080200 leucine-rich repeat family protein, putative, expressed -
18 Sobic.001G298600 ribosomal L18p/L5e family protein, expressed -
19 Sobic.001G387600 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
20 Sobic.005G012200 STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase


Gene co-expression network
sample Sobic009G008100 Sobic009G008100 Sobic009G057700 Sobic009G057700 Sobic009G008100--Sobic009G057700 Sobic006G042200 Sobic006G042200 Sobic009G008100--Sobic006G042200 Sobic003G308700 Sobic003G308700 Sobic009G008100--Sobic003G308700 Sobic002G073900 Sobic002G073900 Sobic009G008100--Sobic002G073900 Sobic004G227300 Sobic004G227300 Sobic009G008100--Sobic004G227300 Sobic001G222250 Sobic001G222250 Sobic009G008100--Sobic001G222250 Sobic002G040800 Sobic002G040800 Sobic009G008100--Sobic002G040800 Sobic001G261597 Sobic001G261597 Sobic009G008100--Sobic001G261597 Sobic006G043300 Sobic006G043300 Sobic009G008100--Sobic006G043300 Sobic009G057700--Sobic009G008100 Sobic009G057700--Sobic003G308700 Sobic007G029100 Sobic007G029100 Sobic009G057700--Sobic007G029100 Sobic002G281800 Sobic002G281800 Sobic009G057700--Sobic002G281800 Sobic009G029700 Sobic009G029700 Sobic009G057700--Sobic009G029700 Sobic009G057700--Sobic004G227300 Sobic010G265800 Sobic010G265800 Sobic009G057700--Sobic010G265800 Sobic004G117800 Sobic004G117800 Sobic009G057700--Sobic004G117800 Sobic004G152100 Sobic004G152100 Sobic009G057700--Sobic004G152100 Sobic004G135300 Sobic004G135300 Sobic006G042200--Sobic004G135300 Sobic007G054100 Sobic007G054100 Sobic006G042200--Sobic007G054100 Sobic006G042200--Sobic001G222250 Sobic004G174900 Sobic004G174900 Sobic006G042200--Sobic004G174900 Sobic008G125600 Sobic008G125600 Sobic006G042200--Sobic008G125600 Sobic004G010101 Sobic004G010101 Sobic006G042200--Sobic004G010101 Sobic006G042200--Sobic009G008100 Sobic006G042200--Sobic002G073900 Sobic006G042200--Sobic002G040800 Sobic003G308700--Sobic002G073900 Sobic003G308700--Sobic007G054100 Sobic002G174900 Sobic002G174900 Sobic003G308700--Sobic002G174900 Sobic002G273700 Sobic002G273700 Sobic003G308700--Sobic002G273700 Sobic006G172900 Sobic006G172900 Sobic003G308700--Sobic006G172900 Sobic009G094800 Sobic009G094800 Sobic003G308700--Sobic009G094800 Sobic001G387600 Sobic001G387600 Sobic003G308700--Sobic001G387600 Sobic003G308700--Sobic009G008100 Sobic002G187801 Sobic002G187801 Sobic003G308700--Sobic002G187801 Sobic002G073900--Sobic003G308700 Sobic005G072200 Sobic005G072200 Sobic002G073900--Sobic005G072200 Sobic002G073900--Sobic006G042200 Sobic002G073900--Sobic007G054100 Sobic002G073900--Sobic001G261597 Sobic004G092000 Sobic004G092000 Sobic002G073900--Sobic004G092000 Sobic002G073900--Sobic009G008100 Sobic002G073900--Sobic004G227300 Sobic010G009400 Sobic010G009400 Sobic002G073900--Sobic010G009400 Sobic001G427500 Sobic001G427500 Sobic004G227300--Sobic001G427500 Sobic004G227300--Sobic001G261597 Sobic006G171700 Sobic006G171700 Sobic004G227300--Sobic006G171700 Sobic003G359900 Sobic003G359900 Sobic004G227300--Sobic003G359900 Sobic003G299000 Sobic003G299000 Sobic004G227300--Sobic003G299000 Sobic004G214100 Sobic004G214100 Sobic004G227300--Sobic004G214100 Sobic002G259400 Sobic002G259400 Sobic004G227300--Sobic002G259400 Sobic007G062500 Sobic007G062500 Sobic004G227300--Sobic007G062500 Sobic006G119800 Sobic006G119800 Sobic004G227300--Sobic006G119800 Sobic010G143800 Sobic010G143800 Sobic001G222250--Sobic010G143800 Sobic005G027400 Sobic005G027400 Sobic001G222250--Sobic005G027400 Sobic010G079900 Sobic010G079900 Sobic001G222250--Sobic010G079900 Sobic001G222250--Sobic004G135300 Sobic001G191600 Sobic001G191600 Sobic001G222250--Sobic001G191600 Sobic003G109700 Sobic003G109700 Sobic001G222250--Sobic003G109700 Sobic001G081200 Sobic001G081200 Sobic001G222250--Sobic001G081200 Sobic001G298600 Sobic001G298600 Sobic001G222250--Sobic001G298600 Sobic001G362200 Sobic001G362200 Sobic001G222250--Sobic001G362200 Sobic010G228700 Sobic010G228700 Sobic002G040800--Sobic010G228700 Sobic002G040800--Sobic009G094800 Sobic001G544500 Sobic001G544500 Sobic002G040800--Sobic001G544500 Sobic002G040800--Sobic002G174900 Sobic008G001400 Sobic008G001400 Sobic002G040800--Sobic008G001400 Sobic002G040800--Sobic004G135300 Sobic002G040800--Sobic006G042200 Sobic003G368800 Sobic003G368800 Sobic002G040800--Sobic003G368800 Sobic006G263000 Sobic006G263000 Sobic002G040800--Sobic006G263000 Sobic001G261597--Sobic004G227300 Sobic003G000150 Sobic003G000150 Sobic001G261597--Sobic003G000150 Sobic001G261597--Sobic004G214100 Sobic001G261597--Sobic002G073900 Sobic001G261597--Sobic003G359900 Sobic001G261597--Sobic001G427500 Sobic001G261597--Sobic005G072200 Sobic001G261597--Sobic002G040800 Sobic009G190800 Sobic009G190800 Sobic001G261597--Sobic009G190800 Sobic002G276100 Sobic002G276100 Sobic006G043300--Sobic002G276100 Sobic006G043300--Sobic010G079900 Sobic006G043300--Sobic001G222250 Sobic006G043300--Sobic010G143800 Sobic010G262000 Sobic010G262000 Sobic006G043300--Sobic010G262000 Sobic001G043800 Sobic001G043800 Sobic006G043300--Sobic001G043800 Sobic002G294800 Sobic002G294800 Sobic006G043300--Sobic002G294800 Sobic001G186800 Sobic001G186800 Sobic006G043300--Sobic001G186800 Sobic008G022300 Sobic008G022300 Sobic006G043300--Sobic008G022300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.