Gene annotation
Transcriptome id Sobic.003G412700.1
Synonym Sb03g044700, LCB2
Functional annotation serine palmitoyltransferase 2, putative, expressed
UniProt C5XH06
Pfam PF00155
Panther DB PTHR13693 PTHR13693:SF62
NCBI CDD -
KEGG Orthology K00654; serine palmitoyltransferase
Gene Ontology GO:0009058; biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G23670 : long chain base2
RAP-DB (Rice) LOC_Os01g70380.1 : serine palmitoyltransferase 2, putative, expressed
MaizeGDB (Corn) Zm00025a039217
Brachypodium KQK11332
Barley HORVU3Hr1G096620.4 , HORVU3Hr1G096620.6 , HORVU3Hr1G096620.7 , HORVU3Hr1G096620.5 , HORVU3Hr1G096620.2 , HORVU3Hr1G096620.3 , HORVU3Hr1G096620.1 , HORVU3Hr1G096620.8 , HORVU3Hr1G096620.9 , HORVU7Hr1G037090.18 , HORVU7Hr1G037090.19 , HORVU3Hr1G096620.10 , HORVU3Hr1G096620.11 , HORVU7Hr1G037090.15 , HORVU7Hr1G037090.3 , HORVU7Hr1G037090.5 , HORVU7Hr1G037090.8 , HORVU7Hr1G037090.9
Wheat TraesCS3B02G477100 , TraesCS3B02G477100 , TraesCS3D02G435900 , TraesCS3A02G443500 , TraesCS3A02G443500
Populus -


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cDNA sequences
Sobic.003G412700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G079900 AT hook-containing DNA-binding protein, putative, expressed -
2 Sobic.004G003501 - -
3 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
4 Sobic.003G086900 C2 domain containing protein, putative, expressed -
5 Sobic.001G253700 protein kinase domain containing protein, expressed K04733: interleukin-1 receptor-associated kinase 4
6 Sobic.004G237600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
7 Sobic.008G070500 GTP binding protein, putative, expressed -
8 Sobic.002G187801 - K03134: transcription initiation factor TFIID subunit 10
9 Sobic.001G309400 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
10 Sobic.002G361300 eukaryotic aspartyl protease domain containing protein, expressed -
11 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
12 Sobic.006G160300 DNA binding protein, putative, expressed -
13 Sobic.007G203300 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
14 Sobic.001G431000 Sel1 repeat domain containing protein, putative, expressed K14026: SEL1, SEL1 protein
15 Sobic.002G059300 OsFBX181 - F-box domain containing protein, expressed -
16 Sobic.006G043300 - -
17 Sobic.004G119100 expressed protein -
18 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
19 Sobic.009G008100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
20 Sobic.001G235900 white-brown complex homolog protein, putative, expressed -


Gene co-expression network
sample Sobic003G412700 Sobic003G412700 Sobic010G079900 Sobic010G079900 Sobic003G412700--Sobic010G079900 Sobic004G003501 Sobic004G003501 Sobic003G412700--Sobic004G003501 Sobic006G199200 Sobic006G199200 Sobic003G412700--Sobic006G199200 Sobic003G086900 Sobic003G086900 Sobic003G412700--Sobic003G086900 Sobic001G253700 Sobic001G253700 Sobic003G412700--Sobic001G253700 Sobic004G237600 Sobic004G237600 Sobic003G412700--Sobic004G237600 Sobic008G070500 Sobic008G070500 Sobic003G412700--Sobic008G070500 Sobic002G187801 Sobic002G187801 Sobic003G412700--Sobic002G187801 Sobic001G309400 Sobic001G309400 Sobic003G412700--Sobic001G309400 Sobic005G027400 Sobic005G027400 Sobic010G079900--Sobic005G027400 Sobic010G079900--Sobic001G309400 Sobic001G260400 Sobic001G260400 Sobic010G079900--Sobic001G260400 Sobic010G079900--Sobic006G199200 Sobic010G079900--Sobic003G086900 Sobic003G184699 Sobic003G184699 Sobic010G079900--Sobic003G184699 Sobic004G142900 Sobic004G142900 Sobic010G079900--Sobic004G142900 Sobic003G139900 Sobic003G139900 Sobic010G079900--Sobic003G139900 Sobic001G222250 Sobic001G222250 Sobic010G079900--Sobic001G222250 Sobic004G003401 Sobic004G003401 Sobic004G003501--Sobic004G003401 Sobic001G127000 Sobic001G127000 Sobic004G003501--Sobic001G127000 Sobic004G067700 Sobic004G067700 Sobic004G003501--Sobic004G067700 Sobic004G003501--Sobic002G187801 Sobic010G005700 Sobic010G005700 Sobic004G003501--Sobic010G005700 Sobic001G114000 Sobic001G114000 Sobic004G003501--Sobic001G114000 Sobic006G194500 Sobic006G194500 Sobic004G003501--Sobic006G194500 Sobic009G041700 Sobic009G041700 Sobic004G003501--Sobic009G041700 Sobic001G284800 Sobic001G284800 Sobic004G003501--Sobic001G284800 Sobic003G195000 Sobic003G195000 Sobic006G199200--Sobic003G195000 Sobic010G205800 Sobic010G205800 Sobic006G199200--Sobic010G205800 Sobic001G493200 Sobic001G493200 Sobic006G199200--Sobic001G493200 Sobic001G241100 Sobic001G241100 Sobic006G199200--Sobic001G241100 Sobic006G199200--Sobic005G027400 Sobic006G199200--Sobic010G079900 Sobic001G121200 Sobic001G121200 Sobic006G199200--Sobic001G121200 Sobic006G160300 Sobic006G160300 Sobic006G199200--Sobic006G160300 Sobic001G289800 Sobic001G289800 Sobic006G199200--Sobic001G289800 Sobic007G193700 Sobic007G193700 Sobic003G086900--Sobic007G193700 Sobic006G225900 Sobic006G225900 Sobic003G086900--Sobic006G225900 Sobic010G196500 Sobic010G196500 Sobic003G086900--Sobic010G196500 Sobic004G174200 Sobic004G174200 Sobic003G086900--Sobic004G174200 Sobic001G016700 Sobic001G016700 Sobic003G086900--Sobic001G016700 Sobic001G390800 Sobic001G390800 Sobic003G086900--Sobic001G390800 Sobic001G268200 Sobic001G268200 Sobic003G086900--Sobic001G268200 Sobic003G086900--Sobic001G121200 Sobic003G422500 Sobic003G422500 Sobic003G086900--Sobic003G422500 Sobic006G237400 Sobic006G237400 Sobic001G253700--Sobic006G237400 Sobic001G000200 Sobic001G000200 Sobic001G253700--Sobic001G000200 Sobic006G273200 Sobic006G273200 Sobic001G253700--Sobic006G273200 Sobic003G176600 Sobic003G176600 Sobic001G253700--Sobic003G176600 Sobic003G001000 Sobic003G001000 Sobic001G253700--Sobic003G001000 Sobic004G119100 Sobic004G119100 Sobic001G253700--Sobic004G119100 Sobic009G249200 Sobic009G249200 Sobic001G253700--Sobic009G249200 Sobic001G253700--Sobic002G187801 Sobic007G190333 Sobic007G190333 Sobic001G253700--Sobic007G190333 Sobic001G123000 Sobic001G123000 Sobic004G237600--Sobic001G123000 Sobic001G180900 Sobic001G180900 Sobic004G237600--Sobic001G180900 Sobic006G176600 Sobic006G176600 Sobic004G237600--Sobic006G176600 Sobic006G034000 Sobic006G034000 Sobic004G237600--Sobic006G034000 Sobic006G148200 Sobic006G148200 Sobic004G237600--Sobic006G148200 Sobic004G234900 Sobic004G234900 Sobic004G237600--Sobic004G234900 Sobic002G361300 Sobic002G361300 Sobic004G237600--Sobic002G361300 Sobic006G225600 Sobic006G225600 Sobic004G237600--Sobic006G225600 Sobic001G323000 Sobic001G323000 Sobic004G237600--Sobic001G323000 Sobic008G070500--Sobic001G309400 Sobic004G052900 Sobic004G052900 Sobic008G070500--Sobic004G052900 Sobic002G340100 Sobic002G340100 Sobic008G070500--Sobic002G340100 Sobic008G070500--Sobic001G114000 Sobic008G070500--Sobic010G205800 Sobic004G274200 Sobic004G274200 Sobic008G070500--Sobic004G274200 Sobic003G443100 Sobic003G443100 Sobic008G070500--Sobic003G443100 Sobic001G166600 Sobic001G166600 Sobic008G070500--Sobic001G166600 Sobic009G094300 Sobic009G094300 Sobic008G070500--Sobic009G094300 Sobic008G165700 Sobic008G165700 Sobic002G187801--Sobic008G165700 Sobic002G187801--Sobic001G253700 Sobic009G233300 Sobic009G233300 Sobic002G187801--Sobic009G233300 Sobic002G187801--Sobic006G273200 Sobic002G187801--Sobic001G284800 Sobic002G187801--Sobic004G003501 Sobic003G000150 Sobic003G000150 Sobic002G187801--Sobic003G000150 Sobic002G092300 Sobic002G092300 Sobic002G187801--Sobic002G092300 Sobic002G365100 Sobic002G365100 Sobic002G187801--Sobic002G365100 Sobic007G177000 Sobic007G177000 Sobic001G309400--Sobic007G177000 Sobic001G309400--Sobic010G079900 Sobic007G115200 Sobic007G115200 Sobic001G309400--Sobic007G115200 Sobic002G347000 Sobic002G347000 Sobic001G309400--Sobic002G347000 Sobic001G309400--Sobic008G070500 Sobic001G309400--Sobic004G142900 Sobic001G309400--Sobic010G205800 Sobic001G207000 Sobic001G207000 Sobic001G309400--Sobic001G207000 Sobic001G309400--Sobic006G199200
Octagon: transcription factors


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