Gene annotation
Transcriptome id Sobic.004G077600.1
Synonym Sb04g006410, ATSWI3B, CHB2, SWI3B
Functional annotation SWIRM domain containing protein, expressed
UniProt C5XXF4
Pfam PF00249 PF16495 PF04433
Panther DB PTHR12802 PTHR12802:SF44
NCBI CDD KOG1279; Chromatin remodeling factor subunit and related transcription factors
KEGG Orthology K11649; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G33610 : switch subunit 3
RAP-DB (Rice) LOC_Os02g10060.1 : SWIRM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034678 , Zm00025a011676
Brachypodium -
Barley HORVU6Hr1G034070.2 , HORVU6Hr1G034070.3 , HORVU6Hr1G034070.1
Wheat TraesCS6B02G195400 , TraesCS6D02G156700 , TraesCS6D02G156700 , TraesCS6D02G156700 , TraesCS6A02G167800 , TraesCS6A02G167800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G074300 phytoene dehydrogenase-like, putative, expressed K16750: biogenesis of lysosome-related organelles complex 1 subunit 2
2 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
3 Sobic.002G113900 lipid binding protein, putative, expressed -
4 Sobic.002G268400 expressed protein -
5 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
6 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
7 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
8 Sobic.001G459100 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
9 Sobic.004G086700 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
10 Sobic.007G078500 serine/threonine-protein kinase HT1, putative, expressed -
11 Sobic.002G306400 zinc finger family protein, putative, expressed -
12 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
13 Sobic.001G207500 ZOS10-06 - C2H2 zinc finger protein, expressed K15685: E3 ubiquitin-protein ligase Hakai
14 Sobic.007G084100 expressed protein -
15 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
16 Sobic.008G076800 expressed protein -
17 Sobic.010G092300 N-rich protein, putative, expressed -
18 Sobic.002G126500 RNA recognition motif containing protein, expressed -
19 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
20 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -


Gene co-expression network
sample Sobic004G077600 Sobic004G077600 Sobic004G074300 Sobic004G074300 Sobic004G077600--Sobic004G074300 Sobic005G160400 Sobic005G160400 Sobic004G077600--Sobic005G160400 Sobic002G113900 Sobic002G113900 Sobic004G077600--Sobic002G113900 Sobic002G268400 Sobic002G268400 Sobic004G077600--Sobic002G268400 Sobic003G122500 Sobic003G122500 Sobic004G077600--Sobic003G122500 Sobic002G347000 Sobic002G347000 Sobic004G077600--Sobic002G347000 Sobic009G004600 Sobic009G004600 Sobic004G077600--Sobic009G004600 Sobic001G459100 Sobic001G459100 Sobic004G077600--Sobic001G459100 Sobic004G086700 Sobic004G086700 Sobic004G077600--Sobic004G086700 Sobic004G074300--Sobic002G268400 Sobic003G119400 Sobic003G119400 Sobic004G074300--Sobic003G119400 Sobic001G152000 Sobic001G152000 Sobic004G074300--Sobic001G152000 Sobic009G033900 Sobic009G033900 Sobic004G074300--Sobic009G033900 Sobic001G263000 Sobic001G263000 Sobic004G074300--Sobic001G263000 Sobic002G259400 Sobic002G259400 Sobic004G074300--Sobic002G259400 Sobic010G057900 Sobic010G057900 Sobic004G074300--Sobic010G057900 Sobic004G074300--Sobic004G077600 Sobic006G054500 Sobic006G054500 Sobic004G074300--Sobic006G054500 Sobic009G092400 Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic007G084100 Sobic007G084100 Sobic005G160400--Sobic007G084100 Sobic010G237900 Sobic010G237900 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic005G160400--Sobic002G347000 Sobic001G473600 Sobic001G473600 Sobic005G160400--Sobic001G473600 Sobic010G265300 Sobic010G265300 Sobic005G160400--Sobic010G265300 Sobic006G121300 Sobic006G121300 Sobic005G160400--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic005G160400--Sobic001G114500 Sobic006G270900 Sobic006G270900 Sobic002G113900--Sobic006G270900 Sobic002G113900--Sobic009G004600 Sobic004G226800 Sobic004G226800 Sobic002G113900--Sobic004G226800 Sobic006G049700 Sobic006G049700 Sobic002G113900--Sobic006G049700 Sobic004G356900 Sobic004G356900 Sobic002G113900--Sobic004G356900 Sobic004G301900 Sobic004G301900 Sobic002G113900--Sobic004G301900 Sobic007G019800 Sobic007G019800 Sobic002G113900--Sobic007G019800 Sobic004G104900 Sobic004G104900 Sobic002G113900--Sobic004G104900 Sobic002G113900--Sobic002G268400 Sobic002G268400--Sobic010G057900 Sobic002G268400--Sobic001G152000 Sobic002G268400--Sobic004G074300 Sobic006G252100 Sobic006G252100 Sobic002G268400--Sobic006G252100 Sobic002G268400--Sobic009G033900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic003G122500--Sobic007G084100 Sobic003G122500--Sobic005G160400 Sobic003G123000 Sobic003G123000 Sobic003G122500--Sobic003G123000 Sobic001G241100 Sobic001G241100 Sobic003G122500--Sobic001G241100 Sobic001G119900 Sobic001G119900 Sobic003G122500--Sobic001G119900 Sobic010G171100 Sobic010G171100 Sobic003G122500--Sobic010G171100 Sobic002G047700 Sobic002G047700 Sobic003G122500--Sobic002G047700 Sobic006G199200 Sobic006G199200 Sobic003G122500--Sobic006G199200 Sobic004G257100 Sobic004G257100 Sobic003G122500--Sobic004G257100 Sobic003G143200 Sobic003G143200 Sobic002G347000--Sobic003G143200 Sobic002G347000--Sobic005G160400 Sobic001G309400 Sobic001G309400 Sobic002G347000--Sobic001G309400 Sobic006G180000 Sobic006G180000 Sobic002G347000--Sobic006G180000 Sobic007G115200 Sobic007G115200 Sobic002G347000--Sobic007G115200 Sobic002G347000--Sobic006G199200 Sobic007G167900 Sobic007G167900 Sobic002G347000--Sobic007G167900 Sobic001G281600 Sobic001G281600 Sobic002G347000--Sobic001G281600 Sobic008G076800 Sobic008G076800 Sobic002G347000--Sobic008G076800 Sobic002G400000 Sobic002G400000 Sobic009G004600--Sobic002G400000 Sobic009G004600--Sobic004G356900 Sobic003G217400 Sobic003G217400 Sobic009G004600--Sobic003G217400 Sobic009G198500 Sobic009G198500 Sobic009G004600--Sobic009G198500 Sobic009G004600--Sobic001G263000 Sobic001G314500 Sobic001G314500 Sobic009G004600--Sobic001G314500 Sobic009G004600--Sobic002G113900 Sobic010G205300 Sobic010G205300 Sobic009G004600--Sobic010G205300 Sobic007G168600 Sobic007G168600 Sobic009G004600--Sobic007G168600 Sobic001G459100--Sobic004G226800 Sobic001G459100--Sobic006G049700 Sobic001G234200 Sobic001G234200 Sobic001G459100--Sobic001G234200 Sobic004G232800 Sobic004G232800 Sobic001G459100--Sobic004G232800 Sobic001G459100--Sobic002G113900 Sobic001G459100--Sobic004G356900 Sobic006G233000 Sobic006G233000 Sobic001G459100--Sobic006G233000 Sobic001G459100--Sobic004G077600 Sobic001G459100--Sobic001G119900 Sobic001G043800 Sobic001G043800 Sobic004G086700--Sobic001G043800 Sobic001G069600 Sobic001G069600 Sobic004G086700--Sobic001G069600 Sobic008G051200 Sobic008G051200 Sobic004G086700--Sobic008G051200 Sobic004G086700--Sobic010G265300 Sobic010G186000 Sobic010G186000 Sobic004G086700--Sobic010G186000 Sobic007G136800 Sobic007G136800 Sobic004G086700--Sobic007G136800 Sobic009G002300 Sobic009G002300 Sobic004G086700--Sobic009G002300 Sobic004G086700--Sobic003G122500 Sobic002G166300 Sobic002G166300 Sobic004G086700--Sobic002G166300
Octagon: transcription factors


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