Gene annotation
Transcriptome id Sobic.001G207500.2,Sobic.001G207500.1
Synonym Sb01g018350
Functional annotation ZOS10-06 - C2H2 zinc finger protein, expressed
UniProt A0A1Z5S761 , C5WXC1
Pfam -
Panther DB PTHR13480
NCBI CDD KOG2932; E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex
KEGG Orthology K15685; E3 ubiquitin-protein ligase Hakai
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G01160 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os10g35190.1 : ZOS10-06 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a017543 , Zm00025a006482
Brachypodium KQJ97271
Barley HORVU1Hr1G061690.2 , HORVU1Hr1G061690.1
Wheat TraesCS1A02G164400 , TraesCS1D02G161400 , TraesCS1D02G150900 , TraesCS1B02G181200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G207500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G341500 transcription initiation factor IID, putative, expressed K03133: TAF9B, transcription initiation factor TFIID subunit 9B
2 Sobic.003G395300 TBC domain containing protein, expressed -
3 Sobic.007G105900 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed -
4 Sobic.001G405600 basic helix-loop-helix, putative, expressed K10863: aprataxin
5 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
6 Sobic.003G273400 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed K00671: glycylpeptide N-tetradecanoyltransferase
7 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
8 Sobic.001G358500 GA20734-PA, putative, expressed -
9 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
10 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -
11 Sobic.003G289500 selenium-binding protein, related, putative, expressed -
12 Sobic.001G238700 TRM112, putative, expressed -
13 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
14 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
15 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
16 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
17 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
18 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
19 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
20 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2


Gene co-expression network
sample Sobic001G207500 Sobic001G207500 Sobic001G341500 Sobic001G341500 Sobic001G207500--Sobic001G341500 Sobic003G395300 Sobic003G395300 Sobic001G207500--Sobic003G395300 Sobic007G105900 Sobic007G105900 Sobic001G207500--Sobic007G105900 Sobic001G405600 Sobic001G405600 Sobic001G207500--Sobic001G405600 Sobic007G167900 Sobic007G167900 Sobic001G207500--Sobic007G167900 Sobic003G273400 Sobic003G273400 Sobic001G207500--Sobic003G273400 Sobic006G039400 Sobic006G039400 Sobic001G207500--Sobic006G039400 Sobic001G358500 Sobic001G358500 Sobic001G207500--Sobic001G358500 Sobic002G347000 Sobic002G347000 Sobic001G207500--Sobic002G347000 Sobic001G341500--Sobic007G167900 Sobic001G341500--Sobic001G207500 Sobic003G374000 Sobic003G374000 Sobic001G341500--Sobic003G374000 Sobic009G192000 Sobic009G192000 Sobic001G341500--Sobic009G192000 Sobic006G049700 Sobic006G049700 Sobic001G341500--Sobic006G049700 Sobic001G206900 Sobic001G206900 Sobic001G341500--Sobic001G206900 Sobic009G149500 Sobic009G149500 Sobic001G341500--Sobic009G149500 Sobic004G092500 Sobic004G092500 Sobic001G341500--Sobic004G092500 Sobic003G127300 Sobic003G127300 Sobic001G341500--Sobic003G127300 Sobic003G395300--Sobic001G207500 Sobic001G467100 Sobic001G467100 Sobic003G395300--Sobic001G467100 Sobic003G395300--Sobic006G039400 Sobic003G395300--Sobic001G358500 Sobic008G129600 Sobic008G129600 Sobic003G395300--Sobic008G129600 Sobic002G160700 Sobic002G160700 Sobic003G395300--Sobic002G160700 Sobic002G131400 Sobic002G131400 Sobic003G395300--Sobic002G131400 Sobic010G179700 Sobic010G179700 Sobic003G395300--Sobic010G179700 Sobic003G182300 Sobic003G182300 Sobic003G395300--Sobic003G182300 Sobic007G105900--Sobic001G405600 Sobic001G035200 Sobic001G035200 Sobic007G105900--Sobic001G035200 Sobic007G017800 Sobic007G017800 Sobic007G105900--Sobic007G017800 Sobic002G136400 Sobic002G136400 Sobic007G105900--Sobic002G136400 Sobic007G105900--Sobic001G207500 Sobic010G059500 Sobic010G059500 Sobic007G105900--Sobic010G059500 Sobic010G034100 Sobic010G034100 Sobic007G105900--Sobic010G034100 Sobic007G105900--Sobic002G131400 Sobic007G189000 Sobic007G189000 Sobic007G105900--Sobic007G189000 Sobic001G405600--Sobic007G017800 Sobic001G405600--Sobic010G034100 Sobic001G405600--Sobic007G105900 Sobic001G405600--Sobic010G059500 Sobic003G143200 Sobic003G143200 Sobic001G405600--Sobic003G143200 Sobic006G234700 Sobic006G234700 Sobic001G405600--Sobic006G234700 Sobic001G405600--Sobic006G039400 Sobic003G296900 Sobic003G296900 Sobic001G405600--Sobic003G296900 Sobic001G405600--Sobic001G035200 Sobic001G085100 Sobic001G085100 Sobic007G167900--Sobic001G085100 Sobic007G167900--Sobic009G192000 Sobic007G167900--Sobic004G092500 Sobic007G167900--Sobic001G206900 Sobic002G047700 Sobic002G047700 Sobic007G167900--Sobic002G047700 Sobic006G101700 Sobic006G101700 Sobic007G167900--Sobic006G101700 Sobic010G020400 Sobic010G020400 Sobic007G167900--Sobic010G020400 Sobic009G222500 Sobic009G222500 Sobic007G167900--Sobic009G222500 Sobic007G167900--Sobic001G341500 Sobic008G137600 Sobic008G137600 Sobic003G273400--Sobic008G137600 Sobic001G532100 Sobic001G532100 Sobic003G273400--Sobic001G532100 Sobic003G273400--Sobic001G207500 Sobic002G306400 Sobic002G306400 Sobic003G273400--Sobic002G306400 Sobic001G294900 Sobic001G294900 Sobic003G273400--Sobic001G294900 Sobic002G341800 Sobic002G341800 Sobic003G273400--Sobic002G341800 Sobic006G109700 Sobic006G109700 Sobic003G273400--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic003G273400--Sobic002G268400 Sobic002G280600 Sobic002G280600 Sobic003G273400--Sobic002G280600 Sobic006G093300 Sobic006G093300 Sobic006G039400--Sobic006G093300 Sobic006G039400--Sobic001G405600 Sobic006G039400--Sobic003G296900 Sobic001G237600 Sobic001G237600 Sobic006G039400--Sobic001G237600 Sobic006G039400--Sobic003G182300 Sobic010G230600 Sobic010G230600 Sobic006G039400--Sobic010G230600 Sobic007G162100 Sobic007G162100 Sobic006G039400--Sobic007G162100 Sobic007G087000 Sobic007G087000 Sobic006G039400--Sobic007G087000 Sobic001G283600 Sobic001G283600 Sobic006G039400--Sobic001G283600 Sobic001G428800 Sobic001G428800 Sobic001G358500--Sobic001G428800 Sobic010G192600 Sobic010G192600 Sobic001G358500--Sobic010G192600 Sobic008G018500 Sobic008G018500 Sobic001G358500--Sobic008G018500 Sobic008G085700 Sobic008G085700 Sobic001G358500--Sobic008G085700 Sobic001G358500--Sobic001G467100 Sobic001G358500--Sobic003G182300 Sobic001G358500--Sobic006G039400 Sobic001G049400 Sobic001G049400 Sobic001G358500--Sobic001G049400 Sobic001G211900 Sobic001G211900 Sobic001G358500--Sobic001G211900 Sobic002G347000--Sobic003G143200 Sobic005G160400 Sobic005G160400 Sobic002G347000--Sobic005G160400 Sobic001G309400 Sobic001G309400 Sobic002G347000--Sobic001G309400 Sobic006G180000 Sobic006G180000 Sobic002G347000--Sobic006G180000 Sobic007G115200 Sobic007G115200 Sobic002G347000--Sobic007G115200 Sobic006G199200 Sobic006G199200 Sobic002G347000--Sobic006G199200 Sobic002G347000--Sobic007G167900 Sobic001G281600 Sobic001G281600 Sobic002G347000--Sobic001G281600 Sobic008G076800 Sobic008G076800 Sobic002G347000--Sobic008G076800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.