Gene annotation
Transcriptome id Sobic.001G238700.1
Synonym Sb01g021120
Functional annotation TRM112, putative, expressed
UniProt C5X0I9
Pfam PF03966
Panther DB PTHR33505 PTHR33505:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G35905 : -
RAP-DB (Rice) LOC_Os10g30300.2 : TRM112, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G098100 sas10/Utp3 family protein, expressed K12592: C1D, exosome complex protein LRP1
2 Sobic.008G104200 nitrilase, putative, expressed -
3 Sobic.001G207500 ZOS10-06 - C2H2 zinc finger protein, expressed K15685: E3 ubiquitin-protein ligase Hakai
4 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
5 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
6 Sobic.004G194900 expressed protein -
7 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
8 Sobic.003G178900 RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed -
9 Sobic.003G143200 expressed protein -
10 Sobic.010G277100 regulator of ribonuclease, putative, expressed -
11 Sobic.009G123600 tungus CG8253-PA, putative, expressed -
12 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
13 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
14 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
15 Sobic.007G188300 integral membrane family protein, putative, expressed -
16 Sobic.002G238400 expressed protein -
17 Sobic.001G421400 expressed protein -
18 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
19 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
20 Sobic.001G341500 transcription initiation factor IID, putative, expressed K03133: TAF9B, transcription initiation factor TFIID subunit 9B


Gene co-expression network
sample Sobic001G238700 Sobic001G238700 Sobic007G098100 Sobic007G098100 Sobic001G238700--Sobic007G098100 Sobic008G104200 Sobic008G104200 Sobic001G238700--Sobic008G104200 Sobic001G207500 Sobic001G207500 Sobic001G238700--Sobic001G207500 Sobic004G206700 Sobic004G206700 Sobic001G238700--Sobic004G206700 Sobic006G180000 Sobic006G180000 Sobic001G238700--Sobic006G180000 Sobic004G194900 Sobic004G194900 Sobic001G238700--Sobic004G194900 Sobic009G149500 Sobic009G149500 Sobic001G238700--Sobic009G149500 Sobic003G178900 Sobic003G178900 Sobic001G238700--Sobic003G178900 Sobic003G143200 Sobic003G143200 Sobic001G238700--Sobic003G143200 Sobic007G098100--Sobic001G238700 Sobic003G012200 Sobic003G012200 Sobic007G098100--Sobic003G012200 Sobic007G098100--Sobic004G194900 Sobic007G098100--Sobic004G206700 Sobic001G199100 Sobic001G199100 Sobic007G098100--Sobic001G199100 Sobic006G136400 Sobic006G136400 Sobic007G098100--Sobic006G136400 Sobic001G085100 Sobic001G085100 Sobic007G098100--Sobic001G085100 Sobic001G261436 Sobic001G261436 Sobic007G098100--Sobic001G261436 Sobic001G091300 Sobic001G091300 Sobic007G098100--Sobic001G091300 Sobic008G104200--Sobic006G136400 Sobic007G162100 Sobic007G162100 Sobic008G104200--Sobic007G162100 Sobic002G303600 Sobic002G303600 Sobic008G104200--Sobic002G303600 Sobic008G070500 Sobic008G070500 Sobic008G104200--Sobic008G070500 Sobic001G166600 Sobic001G166600 Sobic008G104200--Sobic001G166600 Sobic010G223300 Sobic010G223300 Sobic008G104200--Sobic010G223300 Sobic008G104200--Sobic001G238700 Sobic004G178200 Sobic004G178200 Sobic008G104200--Sobic004G178200 Sobic010G051300 Sobic010G051300 Sobic008G104200--Sobic010G051300 Sobic001G341500 Sobic001G341500 Sobic001G207500--Sobic001G341500 Sobic003G395300 Sobic003G395300 Sobic001G207500--Sobic003G395300 Sobic007G105900 Sobic007G105900 Sobic001G207500--Sobic007G105900 Sobic001G405600 Sobic001G405600 Sobic001G207500--Sobic001G405600 Sobic007G167900 Sobic007G167900 Sobic001G207500--Sobic007G167900 Sobic003G273400 Sobic003G273400 Sobic001G207500--Sobic003G273400 Sobic006G039400 Sobic006G039400 Sobic001G207500--Sobic006G039400 Sobic001G358500 Sobic001G358500 Sobic001G207500--Sobic001G358500 Sobic002G347000 Sobic002G347000 Sobic001G207500--Sobic002G347000 Sobic002G405400 Sobic002G405400 Sobic004G206700--Sobic002G405400 Sobic009G084000 Sobic009G084000 Sobic004G206700--Sobic009G084000 Sobic004G206700--Sobic001G199100 Sobic004G206700--Sobic010G223300 Sobic003G338500 Sobic003G338500 Sobic004G206700--Sobic003G338500 Sobic004G206700--Sobic006G180000 Sobic009G123600 Sobic009G123600 Sobic004G206700--Sobic009G123600 Sobic002G059300 Sobic002G059300 Sobic004G206700--Sobic002G059300 Sobic004G206700--Sobic004G194900 Sobic006G180000--Sobic002G303600 Sobic002G047700 Sobic002G047700 Sobic006G180000--Sobic002G047700 Sobic003G264100 Sobic003G264100 Sobic006G180000--Sobic003G264100 Sobic006G180000--Sobic010G223300 Sobic009G092400 Sobic009G092400 Sobic006G180000--Sobic009G092400 Sobic001G007000 Sobic001G007000 Sobic006G180000--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic004G028100 Sobic004G028100 Sobic006G180000--Sobic004G028100 Sobic010G205300 Sobic010G205300 Sobic004G194900--Sobic010G205300 Sobic002G281300 Sobic002G281300 Sobic004G194900--Sobic002G281300 Sobic006G044600 Sobic006G044600 Sobic004G194900--Sobic006G044600 Sobic003G349300 Sobic003G349300 Sobic004G194900--Sobic003G349300 Sobic009G225000 Sobic009G225000 Sobic004G194900--Sobic009G225000 Sobic004G310500 Sobic004G310500 Sobic004G194900--Sobic004G310500 Sobic001G458700 Sobic001G458700 Sobic004G194900--Sobic001G458700 Sobic004G194900--Sobic001G085100 Sobic005G111900 Sobic005G111900 Sobic004G194900--Sobic005G111900 Sobic001G206900 Sobic001G206900 Sobic009G149500--Sobic001G206900 Sobic009G149500--Sobic010G020400 Sobic007G188300 Sobic007G188300 Sobic009G149500--Sobic007G188300 Sobic009G149500--Sobic010G223300 Sobic001G014800 Sobic001G014800 Sobic009G149500--Sobic001G014800 Sobic009G192000 Sobic009G192000 Sobic009G149500--Sobic009G192000 Sobic004G181900 Sobic004G181900 Sobic009G149500--Sobic004G181900 Sobic004G010900 Sobic004G010900 Sobic009G149500--Sobic004G010900 Sobic009G149500--Sobic003G338500 Sobic004G356900 Sobic004G356900 Sobic003G178900--Sobic004G356900 Sobic001G082100 Sobic001G082100 Sobic003G178900--Sobic001G082100 Sobic009G138700 Sobic009G138700 Sobic003G178900--Sobic009G138700 Sobic003G178900--Sobic006G044600 Sobic010G209000 Sobic010G209000 Sobic003G178900--Sobic010G209000 Sobic002G394600 Sobic002G394600 Sobic003G178900--Sobic002G394600 Sobic004G232800 Sobic004G232800 Sobic003G178900--Sobic004G232800 Sobic001G360200 Sobic001G360200 Sobic003G178900--Sobic001G360200 Sobic003G178900--Sobic009G192000 Sobic003G143200--Sobic004G092500 Sobic003G143200--Sobic001G405600 Sobic007G017800 Sobic007G017800 Sobic003G143200--Sobic007G017800 Sobic003G143200--Sobic002G347000 Sobic007G132100 Sobic007G132100 Sobic003G143200--Sobic007G132100 Sobic003G443100 Sobic003G443100 Sobic003G143200--Sobic003G443100 Sobic005G138300 Sobic005G138300 Sobic003G143200--Sobic005G138300 Sobic007G125000 Sobic007G125000 Sobic003G143200--Sobic007G125000 Sobic002G260400 Sobic002G260400 Sobic003G143200--Sobic002G260400
Octagon: transcription factors


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