Gene annotation
Transcriptome id Sobic.007G098100.1
Synonym
Functional annotation sas10/Utp3 family protein, expressed
UniProt A0A1Z5R918
Pfam PF04000
Panther DB PTHR15341 PTHR15341:SF3
NCBI CDD -
KEGG Orthology K12592; C1D, exosome complex protein LRP1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G25080 : Sas10/Utp3/C1D family
RAP-DB (Rice) LOC_Os08g16880.1 : sas10/Utp3 family protein, expressed
MaizeGDB (Corn) Zm00025a030844
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G238700 TRM112, putative, expressed -
2 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
3 Sobic.004G194900 expressed protein -
4 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
5 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
6 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
7 Sobic.001G085100 expressed protein -
8 Sobic.001G261436 - -
9 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
10 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
11 Sobic.001G421400 expressed protein -
12 Sobic.007G014900 STIP1 homology and U box-containing protein 1, putative, expressed K09561: STUB1, STIP1 homology and U-box containing protein 1
13 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
14 Sobic.003G372000 proton-dependent oligopeptide transport, putative, expressed -
15 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
16 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
17 Sobic.004G181900 expressed protein -
18 Sobic.009G123600 tungus CG8253-PA, putative, expressed -
19 Sobic.003G273400 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed K00671: glycylpeptide N-tetradecanoyltransferase
20 Sobic.002G364800 COBW domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G098100 Sobic007G098100 Sobic001G238700 Sobic001G238700 Sobic007G098100--Sobic001G238700 Sobic003G012200 Sobic003G012200 Sobic007G098100--Sobic003G012200 Sobic004G194900 Sobic004G194900 Sobic007G098100--Sobic004G194900 Sobic004G206700 Sobic004G206700 Sobic007G098100--Sobic004G206700 Sobic001G199100 Sobic001G199100 Sobic007G098100--Sobic001G199100 Sobic006G136400 Sobic006G136400 Sobic007G098100--Sobic006G136400 Sobic001G085100 Sobic001G085100 Sobic007G098100--Sobic001G085100 Sobic001G261436 Sobic001G261436 Sobic007G098100--Sobic001G261436 Sobic001G091300 Sobic001G091300 Sobic007G098100--Sobic001G091300 Sobic001G238700--Sobic007G098100 Sobic008G104200 Sobic008G104200 Sobic001G238700--Sobic008G104200 Sobic001G207500 Sobic001G207500 Sobic001G238700--Sobic001G207500 Sobic001G238700--Sobic004G206700 Sobic006G180000 Sobic006G180000 Sobic001G238700--Sobic006G180000 Sobic001G238700--Sobic004G194900 Sobic009G149500 Sobic009G149500 Sobic001G238700--Sobic009G149500 Sobic003G178900 Sobic003G178900 Sobic001G238700--Sobic003G178900 Sobic003G143200 Sobic003G143200 Sobic001G238700--Sobic003G143200 Sobic003G012200--Sobic001G199100 Sobic003G344900 Sobic003G344900 Sobic003G012200--Sobic003G344900 Sobic010G000900 Sobic010G000900 Sobic003G012200--Sobic010G000900 Sobic003G012200--Sobic001G085100 Sobic004G348300 Sobic004G348300 Sobic003G012200--Sobic004G348300 Sobic009G075800 Sobic009G075800 Sobic003G012200--Sobic009G075800 Sobic004G275700 Sobic004G275700 Sobic003G012200--Sobic004G275700 Sobic009G259400 Sobic009G259400 Sobic003G012200--Sobic009G259400 Sobic001G047400 Sobic001G047400 Sobic003G012200--Sobic001G047400 Sobic010G205300 Sobic010G205300 Sobic004G194900--Sobic010G205300 Sobic002G281300 Sobic002G281300 Sobic004G194900--Sobic002G281300 Sobic006G044600 Sobic006G044600 Sobic004G194900--Sobic006G044600 Sobic003G349300 Sobic003G349300 Sobic004G194900--Sobic003G349300 Sobic009G225000 Sobic009G225000 Sobic004G194900--Sobic009G225000 Sobic004G310500 Sobic004G310500 Sobic004G194900--Sobic004G310500 Sobic001G458700 Sobic001G458700 Sobic004G194900--Sobic001G458700 Sobic004G194900--Sobic001G085100 Sobic005G111900 Sobic005G111900 Sobic004G194900--Sobic005G111900 Sobic002G405400 Sobic002G405400 Sobic004G206700--Sobic002G405400 Sobic009G084000 Sobic009G084000 Sobic004G206700--Sobic009G084000 Sobic004G206700--Sobic001G199100 Sobic010G223300 Sobic010G223300 Sobic004G206700--Sobic010G223300 Sobic003G338500 Sobic003G338500 Sobic004G206700--Sobic003G338500 Sobic004G206700--Sobic006G180000 Sobic009G123600 Sobic009G123600 Sobic004G206700--Sobic009G123600 Sobic002G059300 Sobic002G059300 Sobic004G206700--Sobic002G059300 Sobic004G206700--Sobic004G194900 Sobic001G199100--Sobic003G012200 Sobic001G199100--Sobic004G275700 Sobic001G199100--Sobic009G075800 Sobic009G207000 Sobic009G207000 Sobic001G199100--Sobic009G207000 Sobic008G093000 Sobic008G093000 Sobic001G199100--Sobic008G093000 Sobic001G199100--Sobic001G091300 Sobic002G226900 Sobic002G226900 Sobic001G199100--Sobic002G226900 Sobic001G199100--Sobic004G206700 Sobic001G199100--Sobic004G348300 Sobic008G004600 Sobic008G004600 Sobic006G136400--Sobic008G004600 Sobic004G178200 Sobic004G178200 Sobic006G136400--Sobic004G178200 Sobic006G208500 Sobic006G208500 Sobic006G136400--Sobic006G208500 Sobic004G131300 Sobic004G131300 Sobic006G136400--Sobic004G131300 Sobic004G039600 Sobic004G039600 Sobic006G136400--Sobic004G039600 Sobic006G126100 Sobic006G126100 Sobic006G136400--Sobic006G126100 Sobic002G262900 Sobic002G262900 Sobic006G136400--Sobic002G262900 Sobic001G447300 Sobic001G447300 Sobic006G136400--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic006G136400--Sobic002G142900 Sobic006G101700 Sobic006G101700 Sobic001G085100--Sobic006G101700 Sobic001G085100--Sobic001G261436 Sobic006G148200 Sobic006G148200 Sobic001G085100--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G085100--Sobic007G167900 Sobic001G206900 Sobic001G206900 Sobic001G085100--Sobic001G206900 Sobic001G085100--Sobic001G047400 Sobic004G066200 Sobic004G066200 Sobic001G085100--Sobic004G066200 Sobic001G085100--Sobic001G091300 Sobic001G085100--Sobic003G012200 Sobic001G261436--Sobic001G085100 Sobic001G261436--Sobic001G047400 Sobic003G312200 Sobic003G312200 Sobic001G261436--Sobic003G312200 Sobic001G261436--Sobic001G091300 Sobic001G261436--Sobic004G275700 Sobic009G228700 Sobic009G228700 Sobic001G261436--Sobic009G228700 Sobic001G007000 Sobic001G007000 Sobic001G261436--Sobic001G007000 Sobic009G192000 Sobic009G192000 Sobic001G261436--Sobic009G192000 Sobic009G222500 Sobic009G222500 Sobic001G261436--Sobic009G222500 Sobic001G091300--Sobic009G228700 Sobic001G091300--Sobic003G312200 Sobic001G091300--Sobic004G275700 Sobic001G091300--Sobic004G066200 Sobic001G091300--Sobic001G085100 Sobic001G512300 Sobic001G512300 Sobic001G091300--Sobic001G512300 Sobic001G091300--Sobic001G261436 Sobic001G091300--Sobic001G199100 Sobic002G303600 Sobic002G303600 Sobic001G091300--Sobic002G303600
Octagon: transcription factors


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