Gene annotation
Transcriptome id Sobic.002G364800.1,Sobic.002G364800.3,Sobic.002G364800.2
Synonym Sb02g038400
Functional annotation COBW domain containing protein, putative, expressed
UniProt A0A1W0W776 , A0A1B6QFC4
Pfam PF07683 PF02492 PF02492
Panther DB PTHR13748 PTHR13748:SF31
NCBI CDD KOG2743; Cobalamin synthesis protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G26520 : Cobalamin biosynthesis CobW-like protein
RAP-DB (Rice) LOC_Os07g40790.2 : COBW domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048662
Brachypodium KQK15398
Barley HORVU2Hr1G033960.5 , HORVU2Hr1G033960.4 , HORVU2Hr1G033960.7 , HORVU2Hr1G033960.6 , HORVU2Hr1G033960.1 , HORVU2Hr1G033960.3 , HORVU2Hr1G033960.2 , HORVU2Hr1G033960.9 , HORVU2Hr1G033960.8
Wheat TraesCS2D02G188500 , TraesCS2A02G179800 , TraesCS2B02G207100
Populus -


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cDNA sequences
Sobic.002G364800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
2 Sobic.008G156700 phosphoribulokinase/Uridine kinase family protein, expressed -
3 Sobic.008G186200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
4 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
5 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
6 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
7 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
8 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
9 Sobic.002G263600 expressed protein -
10 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
11 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
12 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
13 Sobic.005G034300 peptidyl-prolyl isomerase, putative, expressed -
14 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
15 Sobic.006G160300 DNA binding protein, putative, expressed -
16 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
17 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
18 Sobic.004G337200 dehydrogenase, putative, expressed -
19 Sobic.010G176500 expressed protein -
20 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14


Gene co-expression network
sample Sobic002G364800 Sobic002G364800 Sobic001G199100 Sobic001G199100 Sobic002G364800--Sobic001G199100 Sobic008G156700 Sobic008G156700 Sobic002G364800--Sobic008G156700 Sobic008G186200 Sobic008G186200 Sobic002G364800--Sobic008G186200 Sobic006G136400 Sobic006G136400 Sobic002G364800--Sobic006G136400 Sobic009G056200 Sobic009G056200 Sobic002G364800--Sobic009G056200 Sobic003G195000 Sobic003G195000 Sobic002G364800--Sobic003G195000 Sobic006G196300 Sobic006G196300 Sobic002G364800--Sobic006G196300 Sobic007G071900 Sobic007G071900 Sobic002G364800--Sobic007G071900 Sobic002G263600 Sobic002G263600 Sobic002G364800--Sobic002G263600 Sobic003G012200 Sobic003G012200 Sobic001G199100--Sobic003G012200 Sobic004G275700 Sobic004G275700 Sobic001G199100--Sobic004G275700 Sobic009G075800 Sobic009G075800 Sobic001G199100--Sobic009G075800 Sobic009G207000 Sobic009G207000 Sobic001G199100--Sobic009G207000 Sobic008G093000 Sobic008G093000 Sobic001G199100--Sobic008G093000 Sobic001G091300 Sobic001G091300 Sobic001G199100--Sobic001G091300 Sobic002G226900 Sobic002G226900 Sobic001G199100--Sobic002G226900 Sobic004G206700 Sobic004G206700 Sobic001G199100--Sobic004G206700 Sobic004G348300 Sobic004G348300 Sobic001G199100--Sobic004G348300 Sobic007G098200 Sobic007G098200 Sobic008G156700--Sobic007G098200 Sobic008G032600 Sobic008G032600 Sobic008G156700--Sobic008G032600 Sobic008G156700--Sobic002G364800 Sobic004G310500 Sobic004G310500 Sobic008G156700--Sobic004G310500 Sobic008G156700--Sobic009G075800 Sobic008G033500 Sobic008G033500 Sobic008G156700--Sobic008G033500 Sobic008G156700--Sobic006G136400 Sobic002G262900 Sobic002G262900 Sobic008G156700--Sobic002G262900 Sobic008G156700--Sobic002G226900 Sobic008G186200--Sobic002G364800 Sobic002G189400 Sobic002G189400 Sobic008G186200--Sobic002G189400 Sobic001G265600 Sobic001G265600 Sobic008G186200--Sobic001G265600 Sobic004G237400 Sobic004G237400 Sobic008G186200--Sobic004G237400 Sobic004G177300 Sobic004G177300 Sobic008G186200--Sobic004G177300 Sobic007G184500 Sobic007G184500 Sobic008G186200--Sobic007G184500 Sobic008G186200--Sobic002G262900 Sobic008G186200--Sobic008G156700 Sobic006G271200 Sobic006G271200 Sobic008G186200--Sobic006G271200 Sobic008G004600 Sobic008G004600 Sobic006G136400--Sobic008G004600 Sobic004G178200 Sobic004G178200 Sobic006G136400--Sobic004G178200 Sobic006G208500 Sobic006G208500 Sobic006G136400--Sobic006G208500 Sobic004G131300 Sobic004G131300 Sobic006G136400--Sobic004G131300 Sobic004G039600 Sobic004G039600 Sobic006G136400--Sobic004G039600 Sobic006G126100 Sobic006G126100 Sobic006G136400--Sobic006G126100 Sobic006G136400--Sobic002G262900 Sobic001G447300 Sobic001G447300 Sobic006G136400--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic006G136400--Sobic002G142900 Sobic005G172500 Sobic005G172500 Sobic009G056200--Sobic005G172500 Sobic001G194200 Sobic001G194200 Sobic009G056200--Sobic001G194200 Sobic001G227400 Sobic001G227400 Sobic009G056200--Sobic001G227400 Sobic006G055200 Sobic006G055200 Sobic009G056200--Sobic006G055200 Sobic009G056200--Sobic003G195000 Sobic007G207200 Sobic007G207200 Sobic009G056200--Sobic007G207200 Sobic008G063300 Sobic008G063300 Sobic009G056200--Sobic008G063300 Sobic009G056200--Sobic002G142900 Sobic006G055300 Sobic006G055300 Sobic009G056200--Sobic006G055300 Sobic001G289800 Sobic001G289800 Sobic003G195000--Sobic001G289800 Sobic003G195000--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic003G195000--Sobic009G053900 Sobic002G146300 Sobic002G146300 Sobic003G195000--Sobic002G146300 Sobic002G275700 Sobic002G275700 Sobic003G195000--Sobic002G275700 Sobic005G001000 Sobic005G001000 Sobic003G195000--Sobic005G001000 Sobic003G195000--Sobic002G142900 Sobic001G289600 Sobic001G289600 Sobic003G195000--Sobic001G289600 Sobic001G192000 Sobic001G192000 Sobic003G195000--Sobic001G192000 Sobic003G264100 Sobic003G264100 Sobic006G196300--Sobic003G264100 Sobic002G405400 Sobic002G405400 Sobic006G196300--Sobic002G405400 Sobic001G455800 Sobic001G455800 Sobic006G196300--Sobic001G455800 Sobic006G196300--Sobic002G142900 Sobic010G020400 Sobic010G020400 Sobic006G196300--Sobic010G020400 Sobic001G333100 Sobic001G333100 Sobic006G196300--Sobic001G333100 Sobic006G196300--Sobic001G227400 Sobic004G241900 Sobic004G241900 Sobic006G196300--Sobic004G241900 Sobic002G303600 Sobic002G303600 Sobic006G196300--Sobic002G303600 Sobic002G231500 Sobic002G231500 Sobic007G071900--Sobic002G231500 Sobic007G071900--Sobic009G075800 Sobic001G434200 Sobic001G434200 Sobic007G071900--Sobic001G434200 Sobic007G071900--Sobic001G455800 Sobic002G020700 Sobic002G020700 Sobic007G071900--Sobic002G020700 Sobic004G257100 Sobic004G257100 Sobic007G071900--Sobic004G257100 Sobic007G071900--Sobic001G333100 Sobic003G221400 Sobic003G221400 Sobic007G071900--Sobic003G221400 Sobic003G375200 Sobic003G375200 Sobic007G071900--Sobic003G375200 Sobic002G263600--Sobic002G142900 Sobic002G263600--Sobic010G020400 Sobic010G131900 Sobic010G131900 Sobic002G263600--Sobic010G131900 Sobic002G263600--Sobic009G075800 Sobic003G046300 Sobic003G046300 Sobic002G263600--Sobic003G046300 Sobic009G222500 Sobic009G222500 Sobic002G263600--Sobic009G222500 Sobic001G014800 Sobic001G014800 Sobic002G263600--Sobic001G014800 Sobic002G263600--Sobic006G196300 Sobic002G008800 Sobic002G008800 Sobic002G263600--Sobic002G008800
Octagon: transcription factors


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