Gene annotation
Transcriptome id Sobic.004G337200.2
Synonym Sb04g036490
Functional annotation dehydrogenase, putative, expressed
UniProt A0A1Z5RQ67
Pfam PF08240 PF13602
Panther DB PTHR11695 PTHR11695:SF610
NCBI CDD KOG1198; Zinc-binding oxidoreductase
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G21580 : oxidoreductase, zinc-binding dehydrogenase family protein
RAP-DB (Rice) LOC_Os02g56180.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a022524 , Zm00025a037913 , Zm00025a032878
Brachypodium KQK01244
Barley HORVU6Hr1G088160.7 , HORVU6Hr1G088160.6 , HORVU6Hr1G088160.5 , HORVU6Hr1G088160.4 , HORVU6Hr1G088160.3 , HORVU6Hr1G088160.2 , HORVU6Hr1G088160.1 , HORVU6Hr1G088160.9 , HORVU6Hr1G088160.8
Wheat TraesCS6B02G411600 , TraesCS6D02G358200 , TraesCS6D02G358100 , TraesCS6A02G373900 , TraesCS6A02G374000 , TraesCS6B02G411700
Populus -


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cDNA sequences
Sobic.004G337200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
2 Sobic.003G116900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
3 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.001G296900 dual specificity protein phosphatase, putative, expressed -
5 Sobic.004G266400 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
6 Sobic.002G364800 COBW domain containing protein, putative, expressed -
7 Sobic.006G160300 DNA binding protein, putative, expressed -
8 Sobic.005G203800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lipase precursor, putative, expressed -
9 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
10 Sobic.003G436300 expressed protein -
11 Sobic.003G098000 armadillo/beta-catenin repeat family protein, putative, expressed K08332: vacuolar protein 8
12 Sobic.004G119100 expressed protein -
13 Sobic.003G109100 decarboxylase, putative, expressed K01634: SGPL1, sphinganine-1-phosphate aldolase
14 Sobic.001G462500 natural resistance-associated macrophage protein, putative, expressed K12347: SLC11A1, natural resistance-associated macrophage protein 1
15 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
16 Sobic.002G116900 expressed protein -
17 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
18 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
19 Sobic.004G296400 amino acid permease, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
20 Sobic.006G043600 cysteine proteinase 1 precursor, putative, expressed K01373: cathepsin F


Gene co-expression network
sample Sobic004G337200 Sobic004G337200 Sobic001G270400 Sobic001G270400 Sobic004G337200--Sobic001G270400 Sobic003G116900 Sobic003G116900 Sobic004G337200--Sobic003G116900 Sobic001G121200 Sobic001G121200 Sobic004G337200--Sobic001G121200 Sobic001G296900 Sobic001G296900 Sobic004G337200--Sobic001G296900 Sobic004G266400 Sobic004G266400 Sobic004G337200--Sobic004G266400 Sobic002G364800 Sobic002G364800 Sobic004G337200--Sobic002G364800 Sobic006G160300 Sobic006G160300 Sobic004G337200--Sobic006G160300 Sobic005G203800 Sobic005G203800 Sobic004G337200--Sobic005G203800 Sobic006G034000 Sobic006G034000 Sobic004G337200--Sobic006G034000 Sobic007G024700 Sobic007G024700 Sobic001G270400--Sobic007G024700 Sobic009G094300 Sobic009G094300 Sobic001G270400--Sobic009G094300 Sobic010G205800 Sobic010G205800 Sobic001G270400--Sobic010G205800 Sobic003G109100 Sobic003G109100 Sobic001G270400--Sobic003G109100 Sobic001G137100 Sobic001G137100 Sobic001G270400--Sobic001G137100 Sobic002G270500 Sobic002G270500 Sobic001G270400--Sobic002G270500 Sobic001G270400--Sobic001G121200 Sobic004G052900 Sobic004G052900 Sobic001G270400--Sobic004G052900 Sobic001G199100 Sobic001G199100 Sobic001G270400--Sobic001G199100 Sobic003G436300 Sobic003G436300 Sobic003G116900--Sobic003G436300 Sobic003G116900--Sobic001G270400 Sobic003G116900--Sobic004G337200 Sobic008G074700 Sobic008G074700 Sobic003G116900--Sobic008G074700 Sobic003G116900--Sobic006G034000 Sobic002G105200 Sobic002G105200 Sobic003G116900--Sobic002G105200 Sobic010G020300 Sobic010G020300 Sobic003G116900--Sobic010G020300 Sobic003G365000 Sobic003G365000 Sobic003G116900--Sobic003G365000 Sobic003G116900--Sobic007G024700 Sobic001G390800 Sobic001G390800 Sobic001G121200--Sobic001G390800 Sobic001G121200--Sobic010G205800 Sobic001G268200 Sobic001G268200 Sobic001G121200--Sobic001G268200 Sobic009G113000 Sobic009G113000 Sobic001G121200--Sobic009G113000 Sobic002G111000 Sobic002G111000 Sobic001G121200--Sobic002G111000 Sobic010G147100 Sobic010G147100 Sobic001G121200--Sobic010G147100 Sobic001G207000 Sobic001G207000 Sobic001G121200--Sobic001G207000 Sobic001G146800 Sobic001G146800 Sobic001G121200--Sobic001G146800 Sobic009G056200 Sobic009G056200 Sobic001G121200--Sobic009G056200 Sobic003G053800 Sobic003G053800 Sobic001G296900--Sobic003G053800 Sobic009G243100 Sobic009G243100 Sobic001G296900--Sobic009G243100 Sobic001G296900--Sobic010G020300 Sobic005G160400 Sobic005G160400 Sobic001G296900--Sobic005G160400 Sobic001G296900--Sobic002G105200 Sobic003G422900 Sobic003G422900 Sobic001G296900--Sobic003G422900 Sobic001G395400 Sobic001G395400 Sobic001G296900--Sobic001G395400 Sobic007G166100 Sobic007G166100 Sobic001G296900--Sobic007G166100 Sobic001G296900--Sobic003G436300 Sobic006G043600 Sobic006G043600 Sobic004G266400--Sobic006G043600 Sobic006G204900 Sobic006G204900 Sobic004G266400--Sobic006G204900 Sobic002G159700 Sobic002G159700 Sobic004G266400--Sobic002G159700 Sobic001G016700 Sobic001G016700 Sobic004G266400--Sobic001G016700 Sobic010G224000 Sobic010G224000 Sobic004G266400--Sobic010G224000 Sobic003G322700 Sobic003G322700 Sobic004G266400--Sobic003G322700 Sobic001G462500 Sobic001G462500 Sobic004G266400--Sobic001G462500 Sobic004G266400--Sobic001G121200 Sobic001G207400 Sobic001G207400 Sobic004G266400--Sobic001G207400 Sobic002G364800--Sobic001G199100 Sobic008G156700 Sobic008G156700 Sobic002G364800--Sobic008G156700 Sobic008G186200 Sobic008G186200 Sobic002G364800--Sobic008G186200 Sobic006G136400 Sobic006G136400 Sobic002G364800--Sobic006G136400 Sobic002G364800--Sobic009G056200 Sobic003G195000 Sobic003G195000 Sobic002G364800--Sobic003G195000 Sobic006G196300 Sobic006G196300 Sobic002G364800--Sobic006G196300 Sobic007G071900 Sobic007G071900 Sobic002G364800--Sobic007G071900 Sobic002G263600 Sobic002G263600 Sobic002G364800--Sobic002G263600 Sobic006G160300--Sobic003G195000 Sobic006G199200 Sobic006G199200 Sobic006G160300--Sobic006G199200 Sobic006G160300--Sobic001G121200 Sobic006G160300--Sobic001G268200 Sobic006G160300--Sobic009G056200 Sobic003G086900 Sobic003G086900 Sobic006G160300--Sobic003G086900 Sobic007G193700 Sobic007G193700 Sobic006G160300--Sobic007G193700 Sobic006G160300--Sobic010G147100 Sobic003G220800 Sobic003G220800 Sobic006G160300--Sobic003G220800 Sobic010G130200 Sobic010G130200 Sobic005G203800--Sobic010G130200 Sobic009G133600 Sobic009G133600 Sobic005G203800--Sobic009G133600 Sobic005G203800--Sobic003G436300 Sobic007G007000 Sobic007G007000 Sobic005G203800--Sobic007G007000 Sobic005G203800--Sobic006G034000 Sobic005G203800--Sobic001G121200 Sobic003G354400 Sobic003G354400 Sobic005G203800--Sobic003G354400 Sobic005G203800--Sobic010G205800 Sobic005G203800--Sobic001G390800 Sobic003G312200 Sobic003G312200 Sobic006G034000--Sobic003G312200 Sobic001G323000 Sobic001G323000 Sobic006G034000--Sobic001G323000 Sobic006G034000--Sobic003G436300 Sobic006G148200 Sobic006G148200 Sobic006G034000--Sobic006G148200 Sobic001G180900 Sobic001G180900 Sobic006G034000--Sobic001G180900 Sobic010G130000 Sobic010G130000 Sobic006G034000--Sobic010G130000 Sobic001G091300 Sobic001G091300 Sobic006G034000--Sobic001G091300 Sobic008G110600 Sobic008G110600 Sobic006G034000--Sobic008G110600 Sobic009G228700 Sobic009G228700 Sobic006G034000--Sobic009G228700
Octagon: transcription factors


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